Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00861 GAATGTTGAATATGCATCTTGGCTTCTTTTAAACTGCCCCAAACAGAACCAAAGCATTTGGAGCCATTTTTGGAGTTCATTTCAAGCTCAGTTTCTTCACATGGCTATGGCTTCCATTAATTTCTTCTTCTTTTCATTCTCTCTCTTCTTCCACTTTCTTCCCCTCACTCACTCTGCAACCATCACACTCCAAAACAACTGCACTCACACCATTTGGCCCGGCATTTTATCCGGCGCCGGAACCGCCCCACTTTCCACCACCGGCTTCTCCCTCCTCCCCTCCGCCGCCTCCGTCCTCTCCGTCCCCGCCTCCTGGTCCGGCCGCATTTGGGCTCGCACTTACTGCTCCACCAACCCCTCCTCCAGCCGCTTCTCCTGCGCCACCGCCGACTGCGGCTCCGGCGCCGTCGAGTGCGGCGGCGCCTGCGCTGCCCCACCCGCCACTCTCGCCGAATTCACCCTTAATGGCGGCGGCGGCTTCGATTTCTACGACGTCAGCCTCGTCGATGGGTACAACATCGCGATGCAGATCGTGCCGGTGGGTGGGAAGTCCGGAAATTGTACGGCCACCGGTTGCATTGGGGATTTGAACGGGGATTGCCCACCGGAGCTTCGGGTGGTGATGGGGGGCGGAGAGGATGGGCGGAACCGGAGCGTGGCGTGTAAAAGCGCGTGTGTGGCGTTTGGGAAAGCGGAATATTGTTGCAGTGGGGCGTTTGCAAATCCGAACACGTGCAAGCCGAGTAATTACTCCAAATATTTCAAGGCCAATTGCCCTTTGGCTTACAGTTACGCTTTCGATGACGGTACCAGCACTTTCACCTGTGTGTCAGCCAATTATGTCATTACTTTTTGCCCTTCCTCTTTGCCAAGTTTGAAGGAATCTAGTGAACCACAACCGCAAGCGGCTGACATTTCAGGTTGCCGGCGTCGCACTGCTCCGCCGTCCTTAGCTATTTTCACCGCTGTGTGGGTGGCCGTTTGGCGCCTGCGGCATCTTTTTCCACACTGCCAAAATCACTGAATATTTAAAAGGCTAATAATTTCTTATCTTTTTATGTCATTTTCAATGATTTTTTTTTTAATGTAGTACAAATCTTCAATTAAATCATTCTATATCAAATGTGAAAATTCGTTT 1138 52.11 MAMASINFFFFSFSLFFHFLPLTHSATITLQNNCTHTIWPGILSGAGTAPLSTTGFSLLPSAASVLSVPASWSGRIWARTYCSTNPSSSRFSCATADCGSGAVECGGACAAPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVPVGGKSGNCTATGCIGDLNGDCPPELRVVMGGGEDGRNRSVACKSACVAFGKAEYCCSGAFANPNTCKPSNYSKYFKANCPLAYSYAFDDGTSTFTCVSANYVITFCPSSLPSLKESSEPQPQAADISGCRRRTAPPSLAIFTAVWVAVWRLRHLFPHCQNH 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15782764 15785076 - XM_039027167.1 Bhi03g00861 29638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00861 307 PANTHER - 21 267 - -
Bhi03g00861 307 Pfam Thaumatin family 32 253 IPR001938 -
Bhi03g00861 307 PANTHER OS03G0233200 PROTEIN 21 267 IPR001938 -
Bhi03g00861 307 SUPERFAMILY Osmotin, thaumatin-like protein 26 254 IPR037176 -
Bhi03g00861 307 PIRSF PR5 1 294 IPR001938 -
Bhi03g00861 307 CDD TLP-PA 27 252 - -
Bhi03g00861 307 ProSiteProfiles Thaumatin family profile. 25 253 IPR001938 -
Bhi03g00861 307 Gene3D Thaumatin 26 253 IPR037176 -
Bhi03g00861 307 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Bhi03g00861 307 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Bhi03g00861 307 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Bhi03g00861 307 PRINTS Pathogenesis-related protein signature 243 252 IPR001938 -
Bhi03g00861 307 SMART tha2 28 253 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00861 - - - cmax:111497364 511.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi03g00861 Bhi10g01870 CCT
Bhi03g00861 Bhi10g01870 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00861 Bhi-Chr3:15782764 Bhi10g01869 Bhi-Chr10:46621274 7.56E-99 dispersed
Bhi03g00860 Bhi-Chr3:15628113 Bhi03g00861 Bhi-Chr3:15782764 2.70E-79 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00861 Bhi_Chr03 FPKM 11.633663 16.540237 7.040929 7.51944 8.952743 6.967863 9.493279 0.23567 0.306554 0.210425