Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00887 AAATTCAAGACGTCGACACAAACCAAATCTTTCACTTCTTATTAATTCCTTCTTTTTCTCGAACCCTCCTCTTGCTGACAATTCCACCCACCTCCTTCCTTTTTATCCTTTCTCTTTTATATTATATTATCTTCTTCATCATCATCATCTTCTTCTTCTTCTTTCTCTCTCTATTATTGTGTGTGTCATTGTTTTGCATTATTGTTATATAACCTAACAGCAGCAGCCGACACCAAAAGAAAGAAGACAAACATCATCATCAACGATCAAAAAGATCCAATTTTTAAGACACCCTTGTTACTTTTTTCAGGTTTTAATTTGATCGATCTAGAGTGTTATGTATATGTGTGTTTTTCATGAGGTGGGTTTTTGAGAATGAACGTAAAGTTTTGATCTTTTCTTGTTTTTATGTTTGTGGGGGGTGTGGCAATGAGTGAGGATAAAAGCGATCAGTTTTGAAATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCCCTTTGTGCAACTTGTGATACAAAGGTACACATGTGCAATAAGCTAGCGAGCCGTCATGTAAGGGTTGGCCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTTGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTCCCAGGGGATAAACAAAATGATGTTAAGGACCTGAATGTAAAACCAATGGAACAAGTTGAGAAAGTGAGAAGCCAGAATGAAGAAAGGGGTGAGATTGAGAAGCATCAAGAGTTGAGGGTCTCAGATGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGCCTAATAAAGTAATTGATTTAAACATGTAATGCCCTTCAAAAAAATAAAAAATAAAAAAGATGCTTAATTTTGTTTTTGGGAATTTTCCAGCATTAAGGTGGGAAACATTTTTCAAACGTTTTAAGTTTAGGAAATGAGGTTGAAATGCTATCTCTACCGTTATAAATTTTATTTTTGTAACTGAGCCCAAGGCAAAGCCAAGTTCCACTGTATTGTTCTTTCTTCAAGTTAATGCTTATAACAAAGGCACCTGTTCTTATCTATAA 1183 36.52 MRILCDSCESAAATLFCAADEAALCATCDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDVKDLNVKPMEQVEKVRSQNEERGEIEKHQELRVSDVKKDYSNGDGHSKRPNKVIDLNM 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16612977 16614689 + XM_039026933.1 Bhi03g00887 29664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00887 161 MobiDBLite consensus disorder prediction 116 154 - -
Bhi03g00887 161 CDD Bbox1_BBX-like 4 47 - -
Bhi03g00887 161 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Bhi03g00887 161 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 161 - -
Bhi03g00887 161 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi03g00887 161 SMART bboxneu5 51 89 IPR000315 GO:0008270
Bhi03g00887 161 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi03g00887 161 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 161 - -
Bhi03g00887 161 MobiDBLite consensus disorder prediction 116 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00887 - - - csv:101206016 311.612
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00887 Bhi-Chr3:16612977 Bhi04g00075 Bhi-Chr4:1964514 7.44E-21 dispersed
Bhi03g00887 Bhi-Chr3:16612977 Bhi03g00888 Bhi-Chr3:16612982 7.96E-116 tandem
Bhi01g02390 Bhi-Chr1:58084418 Bhi03g00887 Bhi-Chr3:16612977 5.53E-64 transposed
Bhi03g00887 Bhi-Chr3:16612977 Bhi04g00223 Bhi-Chr4:5456637 6.35E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00075 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 6.6e-42 169.1
Bhi04g00075 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.9e-81 300.4
Bhi02g00794 CCT 5 373 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 7.0e-68 255.4
Bhi04g00075 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 9.9e-54 208.4
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01795 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.2 1.6e-50 197.6
Bhi05g01796 . 1 200 C2C2-CO-like Transcription Factor Family AT1G75540 55.4 6.2e-50 195.7
Bhi01g02390 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.3e-56 216.9
Bhi03g00888 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.2e-50 195.3
Bhi03g00887 . 1 110 C2C2-CO-like Transcription Factor Family AT2G21320 70.9 2.2e-43 172.9
Bhi01g02390 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.7e-57 219.9
Bhi03g00888 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.7e-49 193.4
Bhi03g00887 . 1 103 C2C2-CO-like Transcription Factor Family AT4G38960 74.5 9.0e-43 171.0
Bhi05g01795 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi05g01796 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi10g01956 . 1 109 C2C2-CO-like Transcription Factor Family AT4G39070 72.5 2.1e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
602 PF00643 zf-B_box 2.00E-06 No_clan Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00887 Bhi_Chr03 FPKM 1.993837 2.182393 1.960214 1.564095 4.493012 4.19221 4.403485 4.603268 4.436761 4.585