Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00888 CAAGACGTCGACACAAACCAAATCTTTCACTTCTTATTAATTCCTTCTTTTTCTCGAACCCTCCTCTTGCTGACAATTCCACCCACCTCCTTCCTTTTTATCCTTTCTCTTTTATATTATATTATCTTCTTCATCATCATCATCTTCTTCTTCTTCTTTCTCTCTCTATTATTGTGTGTGTCATTGTTTTGCATTATTGTTATATAACCTAACAGCAGCAGCCGACACCAAAAGAAAGAAGACAAACATCATCATCAACGATCAAAAAGATCCAATTTTTAAGACACCCTTGTTACTTTTTTCAGGTTTTAATTTGATCGATCTAGAGTGTTATGTATATGTGTGTTTTTCATGAGGTGGGTTTTTGAGAATGAACGTAAAGTTTTGATCTTTTCTTGTTTTTATGTTTGTGGGGGGTGTGGCAATGAGTGAGGATAAAAGCGATCAGTTTTGAAATGAGGATACTTTGTGATTCTTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCCCTTTGTGCAACTTGTGATACAAAGGTACACATGTGCAATAAGCTAGCGAGCCGTCATGTAAGGGTTGGCCTAGCAAATCCAAGTGAAGTTCCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGTAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTTGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTCCCAGGGGATAAACAAAATGATGTTAAGGACCTGAATGTAAAACCAATGGAACAAGTTGAGAAAGTGAGAAGCCAGAATGAAGAAAGGGGTGAGATTGAGAAGCATCAAGAGTTGAGGGTCTCAGATGTTAAAAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGCCTAATAAAGTAATTGATTTAAACATGTAATGCCCTTCAAAAAAATAAAAAATAAAAAAGATGCTTAATTTTGTTTTTGGGAATTTTCCAGCATTAAGGTGGGAAACATTTTTCAAACGTTTTAAGTTTAGGAAATGAGGTTGAAATGCTATCTCTACCGTTATAAATTTTATTTTTGTAACTGAGCCCAAGGCAAAGCCAAGTTCCACTGTATTGTTCTTTCTTCAAGTTAATGCTTATAACAAAGGCACCTGTTCTTATCTATAA 1199 36.61 MRILCDSCESAAATLFCAADEAALCATCDTKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDVKDLNVKPMEQVEKVRSQNEERGEIEKHQELRVSDVKKDYSNGDGHSKRPNKVIDLNM 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16612982 16614689 + XM_039026932.1 Bhi03g00888 29665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00888 168 CDD Bbox1_BBX-like 4 47 - -
Bhi03g00888 168 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Bhi03g00888 168 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Bhi03g00888 168 MobiDBLite consensus disorder prediction 123 168 - -
Bhi03g00888 168 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Bhi03g00888 168 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 168 - -
Bhi03g00888 168 MobiDBLite consensus disorder prediction 123 161 - -
Bhi03g00888 168 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi03g00888 168 Gene3D Classic Zinc Finger 1 95 - -
Bhi03g00888 168 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi03g00888 168 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bhi03g00888 168 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02390 Bhi-Chr1:58084418 Bhi03g00888 Bhi-Chr3:16612982 1.97E-73 dispersed
Bhi02g00794 Bhi-Chr2:16495557 Bhi03g00888 Bhi-Chr3:16612982 4.32E-08 dispersed
Bhi03g00888 Bhi-Chr3:16612982 Bhi01g03200 Bhi-Chr1:80175021 6.90E-25 dispersed
Bhi03g00887 Bhi-Chr3:16612977 Bhi03g00888 Bhi-Chr3:16612982 7.96E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
603 PF00643 zf-B_box 2.70E-06 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00888 - - csv:101206016 334.339