Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00894 AAAGAAAAGAAAAGAAACGAAACGAAACGAAAAGAAAACGGAAGGAATGGGAGAAAGAGAAACGGGCGGTACTTGAGGTCAAGGGTACCTTTCGTTCCCCTTATTGAATGTTTTACACTTTTAACCCTAATCCGCCATTCCTTCCATTTCATCACTCTCTCTGCTTCTGGAAGCCACCTACTCTTCCCTTTCTTTGGTACGTTTCTCAATGTATCGACTCCCACAACTCCATCTCTGAACATACTTCTTTTCCCCTCTTTCTCATTCTCTAACTTCTCCTAATCTCCTGATATTTAACGCATGGAGGCAGCCTTGTAGATGGTCTCTTCTCATGAAGGAGATGACTTTCAAATCCACCCCCAAACTTCATTTCGACGAATTTTGGTCCTCAAATCCGCAAACCGCTGCATCCCCCTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGCAAAAAACAACCACTCCTCTGTTCCTGCTCCCCTGCAACTTCAACAACATCACGACAGCGACCAAAATTCCAACCACAGCTTCACCAATTCCTCCGAAGATGACTTTTGGTCTAATTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTTGCTGACTCCACCCAAGAAGAATACTCTGCTGCACCACCGGCCTACTCTGTTTTTCTGACAGAGAAGCCTAGCAATTCCCAAAAGGAAACAACCCACCACGTTCACCCCCTTCCGAGTTTTGAACACATTCTCAATACCCCATTTCCTTCAAAGCCTAGAAGCAAGCGAGCGAAAATCTCCGGCCGAGTCTGGTCCTTAACGAATTTATTTTCTTCCCCACCATTACATTCACCGCCGGCGAAGAAGCCAAAGAAGAATCCGGCAGAGGAGGGCGCCGGTAGGGTCCAGACGCCGCGGCGGTGCAGTCATTGCGGCGTTCAGAAAACCCCTCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGCGTCCGGTTCAAATCCGGGCGGCTTTTTCCCGAATATAGACCGGCTTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTATTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAATTAGTGTAAGAGAACCAGATGGACGAACCCGGTTCAAAGAGAGAGCCAGTTAAGTTTAGTGTGAAAATGTCATTTTCAGGGAGCCTCATTAGGTGCGGTAGGTCATCGGCGCTTGTTAGTTGTTATCGATTAAATTAGAATAGCTTTTATTGATATATTTATTTAGAATAGCTTTTATTAATATATTTATTTAGAATAGCTTTTATTAATATATTTATTTTGTAAAAAGAAAAAAAAAAAAGTGTTTTTTTCCTTTCTAAAAAGCAAGAAATTGCGTAAGTTGTACGCTGTGGCAGTCGCAGTGCTCAACTTTGGTGGAGTCTTTGGAACATTTTGAGAAGGGGAGGAATTGTCTTCTTTCTTCGCTATTTGGGAAACAGAACGATAATCCTTTTAACGCCGTTTTTAACTCAGAACCTAGTACCACTGCCATTTCATTGAACACGTGGCATTTACTGTCCTCTAACTTGTTCTTGACGTTATCTTCCCACGTTAACGCCGTTTAGGTACAGAATTCCAATGCTTTGTCCCATTCCTTGTTTTAACATTTTCAATTCGATTTTTCTGTAATTATTTATTTCATCGAATTTAACCGATGATTTGGTCGAGG 1793 43.56 MKEMTFKSTPKLHFDEFWSSNPQTAASPSSDYIFVDQLLNFSNEEEEEEEEEAEAKNNHSSVPAPLQLQQHHDSDQNSNHSFTNSSEDDFWSNSSRDFEDLEWLSHLVADSTQEEYSAAPPAYSVFLTEKPSNSQKETTHHVHPLPSFEHILNTPFPSKPRSKRAKISGRVWSLTNLFSSPPLHSPPAKKPKKNPAEEGAGRVQTPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLELV 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16827000 16828792 - XM_039025368.1 Bhi03g00894 29671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00894 286 SMART GATA_3 203 257 IPR000679 GO:0006355|GO:0043565
Bhi03g00894 286 PANTHER GATA TRANSCRIPTION FACTOR 184 278 - -
Bhi03g00894 286 PANTHER GATA TRANSCRIPTION FACTOR 26 175 - -
Bhi03g00894 286 MobiDBLite consensus disorder prediction 60 91 - -
Bhi03g00894 286 Pfam GATA zinc finger 209 242 IPR000679 GO:0006355|GO:0043565
Bhi03g00894 286 Coils Coil 38 59 - -
Bhi03g00894 286 PIRSF Txn_fac_GATA_plant 3 285 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bhi03g00894 286 ProSitePatterns GATA-type zinc finger domain. 209 234 IPR000679 GO:0006355|GO:0043565
Bhi03g00894 286 PANTHER GATA TRANSCRIPTION FACTOR 26 175 - -
Bhi03g00894 286 PANTHER GATA TRANSCRIPTION FACTOR 184 278 - -
Bhi03g00894 286 Gene3D - 200 279 IPR013088 GO:0006355|GO:0008270
Bhi03g00894 286 MobiDBLite consensus disorder prediction 178 204 - -
Bhi03g00894 286 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 265 - -
Bhi03g00894 286 ProSiteProfiles GATA-type zinc finger domain profile. 203 239 IPR000679 GO:0006355|GO:0043565
Bhi03g00894 286 MobiDBLite consensus disorder prediction 39 93 - -
Bhi03g00894 286 CDD ZnF_GATA 208 256 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00894 - - K21630 bhj:120072849 577.015
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi03g00894 Bhi10g01940 CCT
Bhi03g00894 Bhi10g01940 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00894 Bhi-Chr3:16827000 Bhi10g01940 Bhi-Chr10:48383774 9.00E-46 dispersed
Bhi03g00894 Bhi-Chr3:16827000 Bhi04g00868 Bhi-Chr4:21889062 2.28E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00868 . 88 363 C2C2-Gata Transcription Factor Family AT5G25830 54.1 3.1e-70 263.1
Bhi01g01062 CCT 2 147 C2C2-Gata Transcription Factor Family AT3G06740 61.0 6.0e-37 151.4
Bhi03g00894 CCT,ECH 97 274 C2C2-Gata Transcription Factor Family AT4G36240 50.5 6.4e-41 165.2
Bhi11g00074 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 2.1e-137 486.9
Bhi05g00589 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.1e-133 474.6
Bhi11g00074 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 1.6e-120 430.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
605 PF00320 GATA 1.20E-16 CL0167 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00894 Bhi_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.138384 0.0