Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00897 AAGATTTGGGGGTGGAAGGATTGTGTGTAATTTTGGAGGATGGTGTTGCGGGGATTTCAGTTTCAGTTGACTCTGGTTGTGGCGGTGATCACCCTCTCCGGCCTTTCGCCGAGAGATGGGCTTACCGGAGTTGAAGCTGCCACTTCCACTTCCGCTTTCGTTCACAACGTCATCTACTCTAACAGGATTGCTATGTTCTCCAAATCCTACTGCCCATATTGCTTGGGTGCCAAACGTATGTTCAGTGAACTCCATGAAAAACCTTTGGTTGTGGAGCTTGATCTTCGAGATGATGGATCTCAAATTCAGAGTGTTCTACTAGACCTGACAGGAAAGCGCACTGTTCCTCAGATTTTTGTGAATGGCAAGCACATTGGTGGCTCTGATGATCTGAAAGCCGCAGTTGCTAGTGGTCAGTTGCAGAAACTTCTGGCTTCAAGTTGATTGCCTTCTTGGAACGATAAATCACGTATTTATTGAACTTGAGCTACATAAGCTGTGTAGATGAATTTTAACTTCGTGAAAACTTTTGATAGTATTTGTTATTCGTTTTTACTCTGCAACAGAGAAGCCTGTTGCAAATTTCTCCCTCTACTTTAATGAGAATCTGCTTTTTTTCCTTTTCATTATTTGAAACCATGGTGAAAAGGTGTTTGATT 659 42.64 MVLRGFQFQLTLVVAVITLSGLSPRDGLTGVEAATSTSAFVHNVIYSNRIAMFSKSYCPYCLGAKRMFSELHEKPLVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVASGQLQKLLASS 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16936736 16938588 + XM_039025484.1 Bhi03g00897 29674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00897 134 SUPERFAMILY Thioredoxin-like 39 132 IPR036249 -
Bhi03g00897 134 ProSiteProfiles Glutaredoxin domain profile. 38 134 - -
Bhi03g00897 134 PANTHER GLUTAREDOXIN-C3 24 133 - -
Bhi03g00897 134 CDD GRX_GRXh_1_2_like 49 130 - -
Bhi03g00897 134 Pfam Glutaredoxin 50 112 IPR002109 -
Bhi03g00897 134 TIGRFAM GRX_euk: glutaredoxin 50 131 IPR011899 -
Bhi03g00897 134 Gene3D Glutaredoxin 31 134 - -
Bhi03g00897 134 PRINTS Glutaredoxin signature 50 68 IPR014025 -
Bhi03g00897 134 PRINTS Glutaredoxin signature 95 108 IPR014025 -
Bhi03g00897 134 PRINTS Glutaredoxin signature 109 122 IPR014025 -
Bhi03g00897 134 PANTHER GLUTAREDOXIN 2 24 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00897 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101222985 236.498
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00225 Bhi-Chr2:4273605 Bhi03g00897 Bhi-Chr3:16936736 5.56E-31 dispersed
Bhi02g00226 Bhi-Chr2:4279054 Bhi03g00897 Bhi-Chr3:16936736 3.19E-35 dispersed
Bhi03g00897 Bhi-Chr3:16936736 Bhi08g01625 Bhi-Chr8:46268006 6.42E-22 dispersed
Bhi03g00897 Bhi-Chr3:16936736 Bhi06g00536 Bhi-Chr6:12138771 1.49E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00897 Bhi_Chr03 FPKM 0.707358 0.0 1.686973 2.27651 0.0 0.0 0.0 0.953905 0.504814 0.637243