Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00899 GTAGACCGTAGATTTATAAAGTAAAAGGGTTAAAAAAAAGAAGAAGAAGAAGAAAATAGAGGAAAGGAATTGTGTTGTTAGAAATAAAAGAGAAAAATAATAGGAAAAAAAGGGAAAATAGGTGAGATAACGGTTGTGAGAGACAAGTTAGCGGGTTTTTCGCGAAAGGAAGGATGGGGGCAAAAGCTGGTGGGACGACACGTGGGAAGAGGAGAACCATTAGATGAGGGGAGAATTATAGAGCGTGTGATGAAGAAGATGGTCGATGGATGTTGAGATCCATGGGAGAGAGAAATGGGATGAAGGGTGTAGTTGAGGCTGTTTGAGAGCGAAAAAGAAGTAATAAGTGGAAGAGAATGAGGGAAGGATAAGAAGAGCAGAAGAGAAAGAAGAGAAATTTTAGGGGAGGGGGATGTGTGTGTGTTTTGAGATGAGTTGGATGGGATGGAGACTTAAATTTGGGTAATCAGAAAAGGAAAAGAAAAGAAAAGAAAAGAGAAAAAAAAAAAAAAAAAATACTGCGCAGAGGAGAGAGAAGGGAAAAAGAAAGGCATGGCGGCGTTGCAGAGAGAGGTGTAATTCTGGGGCCATAAATGTGGATGTATTAGTAACACTGAGTGAAAGGGAAGAAGAGAGATATTGGAAAAAGAAACAAACGGGGGAGGAGAATTGAAAGCGTGATTAACGCTGCCCCCACTATAAGCCACCAGCAGCAGCAGCAGCAGCAGCCAACACATAGCTGCAGCAGCAGTTTGCGCCTCCAATTCAGGCAGAGGGGTTGGACCCTCTGATTATGGATTTTAGGTCACCTTCAGGTTCTGGGTCAGAGCAACAATGTCTGGCTTTTTCACTTTAGGCGGAGGAGGAGGAGGAAGAGAAGACCACCAAGATCAACACCAACAACACAATCGCCCCAACCAAATTATTCCCCCGCCGGATACCAGCTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAGCAGCAACCACAACAACAACAAGAACAACCTCTCTTCCAAACCCAATCCCGGACTACTACTACTACTCCTCCTTACTCCGCCACAATACCCCTCCGGAACTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCGGGATCGGGAGGAGGTGGAATCAGCTGCCAAGATTGTGGCAACCAAGCCAAGAAAGATTGTAGCCATATGCGGTGTAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACTCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAACGCCAAGACAAACTTGCTGCCTTACAAAGCCACCACCACCATCATCATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTACCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAATTAAACTCTCCAGCTGTGTTTCGTTGCGTTCGTGTTAGCTCTACCGACGATACGGACGAACAATACGCGTACCAAACGGCGGTAAATATCGGAGGACACGTTTTCAAGGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCTGGTGGTGGTGGAAGTAGTAGTGGAGTGCAACCACTGAATTTCATTGCTGGTGCCGCTGATGCCACCACCGCAAGCGGTGGTTCTACCGCCGCATTACCCTTGATGGATCCATCTTCTTTATATTCAACGCCGCTGAATAGCTTCATGGCGGGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGGATATTTAGGAAAAAGGGAAGGGGAAATAAGTGATGGTAGGGAGTGGGGAAGAAAGAAAAGGGGCAGCCCGCAAATATAGAGGGGGCTACGTAGGTAAAGGGTTTTGTGGGATTGAATTGAAACAAAACAGAAACTGGGGGAATTATCAATAATAAATTAATAAAATAATAATAAATAATGATGATGATTATGTGGGGAGAGTGGACTGGAGAGAGTGGTCCCTTAAAATTAGGGGAGGGTGTGCCCTTATAGCTTAGGGCACACCCTAAAATATCGTTGCTGTTCATCGGCGTGACATTTGACAAAAACAGACATGTGTGAAGTTAATCAAATTATGAAGATTTCTAAAGTCAGCGTTTTCTTTTTTCTTTTTTTTCTTTTTTTTCTTTGAGAGGGAGAGAAAAAAAAAAAAAAAACTGAAGAAGTTATGAGAGGGTCATTTTGGTAAAAGTACATAGTAATTAGGGTCAGGGTCATGGTCAGGGTCAGGGTCAGGGGGTTGCTTCTTCTGATGATGAATTGTCTCTTCAATCTATTTATGCTTTCCTTCCTCTTC 2414 44.03 MSGFFTLGGGGGGREDHQDQHQQHNRPNQIIPPPDTSLFWYKGNVELWQQQPQQQQEQPLFQTQSRTTTTTPPYSATIPLRNSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHHHHHQLHLHGDNNPKRHRDYNPTSTSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDEQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATTASGGSTAALPLMDPSSLYSTPLNSFMAGRRRRRRRRERRRRRRRRRRRRMDI 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16955402 16961032 + XM_039025420.1 Bhi03g00899 29676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00899 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 106 148 IPR006510 -
Bhi03g00899 343 MobiDBLite consensus disorder prediction 318 343 - -
Bhi03g00899 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 209 256 IPR006511 -
Bhi03g00899 343 MobiDBLite consensus disorder prediction 311 343 - -
Bhi03g00899 343 MobiDBLite consensus disorder prediction 158 173 - -
Bhi03g00899 343 Pfam Domain of unknown function (DUF702) 104 257 - -
Bhi03g00899 343 MobiDBLite consensus disorder prediction 157 185 - -
Bhi03g00899 343 MobiDBLite consensus disorder prediction 50 89 - -
Bhi03g00899 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 319 IPR007818 GO:0003700|GO:0006355
Bhi03g00899 343 MobiDBLite consensus disorder prediction 1 34 - -
Bhi03g00899 343 PANTHER PROTEIN SHORT INTERNODES 1 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02427 Bhi-Chr1:59065156 Bhi03g00899 Bhi-Chr3:16955402 1.39E-59 dispersed
Bhi01g02428 Bhi-Chr1:59065156 Bhi03g00899 Bhi-Chr3:16955402 1.26E-59 dispersed
Bhi03g00899 Bhi-Chr3:16955402 Bhi05g00786 Bhi-Chr5:25410702 3.09E-66 dispersed
Bhi02g01457 Bhi-Chr2:39738514 Bhi03g00899 Bhi-Chr3:16955402 3.00E-42 transposed
Bhi07g01224 Bhi-Chr7:38553272 Bhi03g00899 Bhi-Chr3:16955402 4.73E-39 transposed
Bhi10g00260 Bhi-Chr10:5854482 Bhi03g00899 Bhi-Chr3:16955402 3.56E-48 transposed
Bhi03g00899 Bhi-Chr3:16955402 Bhi04g00221 Bhi-Chr4:5399389 2.45E-25 wgd
Bhi03g00899 Bhi-Chr3:16955402 Bhi09g02200 Bhi-Chr9:61976432 2.21E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
606 PF05142 DUF702 1.10E-66 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00899 - - bhj:120072889 583.948