Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00902 AAATTCTGGGCGTATTGAAAATCTGTTGAGCGTGTCGGTTTTATCAGAGAATCGTAAAAGAGAGTAGAGACGGAAACGAGAAATGGCGGCAGCAGCAGCTGAAGGACGAGTCATCCGCTGTACCACCATTGATTCATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAAGAACTGATAGTTGTGGATTTCACTGCATCATGGTGCGGTCCATGTCGATTTATTGCACCGTTTGTAGACGAACTTGCTCAGAAATTTCCTAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTGGAGTCGGTGGCAAAAGACTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCCTGAAAGAGGGAAGCATTGTGGACAGGGTGGTTGGAGCTAAGAAGGAAGAACTGCACCAGAGAATATTGAAGCACATGGCTGCTACTGCTTCTGCCTGATATTCCCACCAACGATAAACAACTTTATTACACTATGAACTCGCTATCATTTTCTATACTTGATTATCAATTTCTATCCGCTCGCTTTGTTGTTAGAACATGGTATATTCTCCCTTTTGAAGTGGTTTATATTGTTTGTCTTTTCTTCTTTCTTTAAGTTGTAAAAACAATATTATTGTTGCATTAGTATAATTGGGACTTGGGAATCTGATATTCAATTTTCTCCATAAGGAAAAGAAATCGATTCTTTAGGAGGAAGATTTGCTTAA 717 40.73 MAAAAAEGRVIRCTTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFVDELAQKFPSVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGSIVDRVVGAKKEELHQRILKHMAATASA 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17006390 17007827 + XM_039026114.1 Bhi03g00902 29679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00902 121 Gene3D Glutaredoxin 1 120 - -
Bhi03g00902 121 ProSitePatterns Thioredoxin family active site. 34 52 IPR017937 -
Bhi03g00902 121 PANTHER THIOREDOXIN H-TYPE-LIKE ISOFORM X1 5 119 - -
Bhi03g00902 121 ProSiteProfiles Thioredoxin domain profile. 1 117 IPR013766 -
Bhi03g00902 121 SUPERFAMILY Thioredoxin-like 7 116 IPR036249 -
Bhi03g00902 121 Pfam Thioredoxin 13 111 IPR013766 -
Bhi03g00902 121 PANTHER THIOREDOXIN 5 119 - -
Bhi03g00902 121 CDD TRX_family 28 111 - -
Bhi03g00902 121 PRINTS Thioredoxin family signature 33 41 - -
Bhi03g00902 121 PRINTS Thioredoxin family signature 41 50 - -
Bhi03g00902 121 PRINTS Thioredoxin family signature 80 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00902 K03671 trxA; thioredoxin 1 - csv:101203181 199.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00902 Bhi-Chr3:17006390 Bhi07g00654 Bhi-Chr7:25811134 2.60E-42 dispersed
Bhi04g00210 Bhi-Chr4:5109000 Bhi03g00902 Bhi-Chr3:17006390 2.70E-34 dispersed
Bhi09g01947 Bhi-Chr9:54325689 Bhi03g00902 Bhi-Chr3:17006390 7.16E-25 dispersed
Bhi03g01927 Bhi-Chr3:40832896 Bhi03g00902 Bhi-Chr3:17006390 1.63E-07 transposed
Bhi04g00102 Bhi-Chr4:2881776 Bhi03g00902 Bhi-Chr3:17006390 5.58E-13 transposed
Bhi04g01828 Bhi-Chr4:45113496 Bhi03g00902 Bhi-Chr3:17006390 2.91E-16 transposed
Bhi04g02513 Bhi-Chr4:67796082 Bhi03g00902 Bhi-Chr3:17006390 8.99E-11 transposed
Bhi05g01067 Bhi-Chr5:38475146 Bhi03g00902 Bhi-Chr3:17006390 2.36E-15 transposed
Bhi07g01632 Bhi-Chr7:46099928 Bhi03g00902 Bhi-Chr3:17006390 1.24E-35 transposed
Bhi08g01746 Bhi-Chr8:50344262 Bhi03g00902 Bhi-Chr3:17006390 5.83E-30 transposed
Bhi11g01503 Bhi-Chr11:43433691 Bhi03g00902 Bhi-Chr3:17006390 8.04E-09 transposed
Bhi11g03026 Bhi-Chr11:82306764 Bhi03g00902 Bhi-Chr3:17006390 7.34E-35 transposed
Bhi03g00902 Bhi-Chr3:17006390 Bhi04g00209 Bhi-Chr4:5067304 1.05E-37 wgd
Bhi03g00902 Bhi-Chr3:17006390 Bhi09g02194 Bhi-Chr9:61585008 3.65E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00902 Bhi_Chr03 FPKM 19.129511 19.862083 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0