Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00935 TGTTATTTGGACCATGATAACTATATTCGTGGTTGGCAAAAAGGTTTTAAAGAAGGTTCAAAGGAGAGGGAGGAAAACAAAAAAACGTAAGCCGCCCACAAGTTCCGGACAGTTGTGTCCCGGAGAGATTACAGGGTAGCGCCGACCAACGGGAGCTGAAGAAGTGCCACTCTGCTTCCTATCCCTCTAAAATGGACCATTCCATTCCTAACAACCGCGATCGAAATGCATGTACTTCTTCGACGTGGACTCTTCCCGCCGCCGCCGCCGCCTCCTCCTCTTCCCCTCCCGACGATATCTCCCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTTCCCACTTCTCTCTCCTCTCTCCTTCACCCTCCATCTTCTCCGAACTCACCTGCAACATAAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTTCTTATGGGCCGCCTAATGCAGTGCCCGACGAGATCTCCACCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTATTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCTAATGCATCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCTACCTACAAAGCCTAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAAAAAATGAAGGCACTGCAAAATCTGATCCCCAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTATGCATCCTATGAACTTTCCTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGGCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCGGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCACCTTGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAGATTTGCAGCAGAAATGTACTGCGAGATGATCACCAGGTGAATGTGAATGTGAGCCAATCGGAGACAACTCCCTTTGTGTCACGCCCCTATAACATATCAGCACCTCCTGATTTACAAGGATTACAGAATTGCATCTCGGTGGAACCGAGCATCGTAGAAGGAAATCGGTCAGCATTAACACAGGAAGGCCAACTGAAACAACAGAGCTGCAATGATCAACATTGTTGACATTTTCTGTGACCGTCAATGTTCTTATTCTCTTCAAATCATTCACTAGAATTTGGCAAAATCATTCTGAAAATGGGGAAAAGATACTGCATTGAGCTGGCTAATTTCATTGTGGAGAGGATCTGCACAGTTTTCTCCTCTTGTACAAATCTGCATTCAAGTACTCACTGATTTTTCTCCATCATTATTTTTATGGGTTGGATCGTTTTTCTCCTCGTCCATCTTTTGGGGTTTAGTAGTCACGTTTCTTGTTTCTAGTATATGTATTTGATTTGGAGTTCAGATTAGATATGATGGTTTTTTTTGTAACTGTTATGTTCAGATTCCCGTTTATATTAAAACCATAAATCATTGTTTC 1755 44.5 MDHSIPNNRDRNACTSSTWTLPAAAAASSSSPPDDISLFLQQILLRSSSSASHFSLLSPSPSIFSELTCNIRAFTPSTHNIPPSYGPPNAVPDEISTVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEELPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSMHPMNFPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLADQKAASIHPFMSDIGRTNAETPFELTPPIQAHLVPFYLSESSKSKEICSRNVLRDDHQVNVNVSQSETTPFVSRPYNISAPPDLQGLQNCISVEPSIVEGNRSALTQEGQLKQQSCNDQHC 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17720849 17723597 - XM_039027192.1 Bhi03g00935 29712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00935 401 MobiDBLite consensus disorder prediction 101 115 - -
Bhi03g00935 401 CDD bHLH_AtPIF_like 173 235 - -
Bhi03g00935 401 Coils Coil 212 232 - -
Bhi03g00935 401 MobiDBLite consensus disorder prediction 101 185 - -
Bhi03g00935 401 PANTHER TRANSCRIPTION FACTOR SPATULA 29 344 - -
Bhi03g00935 401 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 29 344 IPR031066 -
Bhi03g00935 401 Pfam Helix-loop-helix DNA-binding domain 177 223 IPR011598 GO:0046983
Bhi03g00935 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Bhi03g00935 401 Gene3D - 168 232 IPR036638 GO:0046983
Bhi03g00935 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 235 IPR036638 GO:0046983
Bhi03g00935 401 SMART finulus 179 228 IPR011598 GO:0046983
Bhi03g00935 401 MobiDBLite consensus disorder prediction 169 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00935 Bhi-Chr3:17720849 Bhi03g00937 Bhi-Chr3:17720849 0 dispersed
Bhi03g00935 Bhi-Chr3:17720849 Bhi03g00936 Bhi-Chr3:17720849 0 tandem
Bhi02g00282 Bhi-Chr2:5308104 Bhi03g00935 Bhi-Chr3:17720849 3.38E-20 transposed
Bhi03g00935 Bhi-Chr3:17720849 Bhi04g00369 Bhi-Chr4:9078245 4.38E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
609 PF00010 HLH 4.70E-14 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00935 - - bhj:120074164 687.952