Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00963 AAACTCGGGAATTGAACTACATCATCCATCCAAACAGATTAAACAAACATGGAATTAGCCAATCGATCGCCAATTTTATCAAAGTTCTTCACACCCTGACCCTGTAATAATTCTAATCATTCCTCCTCTCCAGTAATAATCTCCAGTTCCCTCGTTTCCATTTTCGAACTGTGACCAGAAACGACCTTCGCGGAGATCTTTACTCGTCGCGCCATCTTCTTCGCTTTCTTTCCTTCCCAATCATTGATTCCATGAGATCGAGCTCTACTTTTCTATTCGTCGCTATTGGATATAAAGATTTAACTACGGAAGCTGCAACTTCATTGTGAATATCTCTACTTCTGGTCTGGTCTTCATGGTTTCTATTTGAGGAGTTGAGATCCACGTAGTTCTCAGTTTTAACCAGGATAGTAAAGCAGCATTCAACCTGTTTCATTCGTATGATAAAATGGATAATGGAACTTCTAATAGTTCAACAGAATCTGCAGTCAACAATTCGGCTCCAAAAGTCGATAGCCAAAGTAGTAAAGGAGATAATTTGATATCTATTTTATCTACGTCTGGAATATCGTCATGGGCCAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCTGAAAATGACTCCAAGGCAGGAAGTTCTGGGATGTCGGCAATTGCTCGTTTCAGCAGTGGCTTTGGACTCCGGATACCTGCGATGTCTCCTGCACAGGGTGATGGTGCTGCAGATACCAAATCAGCAATGCAATCTGGTGTTTTTGAATCATTGACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATTAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCTCATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTCTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTGTTCCTAAAGTTCTTCCAAACATCAGCAGAGGCAATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGCATTTTAACACATTTCAACGGGAACACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAACCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAAGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCGAAGAAAGGATTTGTGGTTTTTGCACTCCCGGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCACGACCGGCATGGAGATTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAGTATTATTAAGTGACACGGATCTTGATGGTTTTGATAAGAGAAAACTCCCAACTCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGGTTCAGCTGGCAAAGGATCTGATCGGGCATCAGGTCAAGACGCAGCACAATCCAACTCAAACAAAATTTCCGGAGGTGAGGAGAATGACGACAATTTATTCTCTGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGACCATTCATCAACAACAATGGCCTCTGAAAGAATTGGGAATTTAGCGCATGAAACCAGTCATTTGTCCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCAAAAGAACCGGCCGTGATACAACCATCAAGCCTTGAGATCACGAATTTGGATTCAGTAAGAGCAAGTGATTTCAAGGCAATAGCGGCTGATGCGTCATTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGACAGTTGAACGCTGATTAGAAACCATTAATACTCACAAAGGTTGGGTTACCAGAAGCTGTGATATTTGAAGTAAGGTCGGCTTTCAATTGGCTGTCTTTTCCATTATAATGATACAATCCCTCCTTTAAACCGCTCGGCCTCATGGTAGAGAAAAATTAATAGAAAATACTTAATTGTATTGTTCACATCATTGTACTGCTTAACACAATTCTTTTTTTCAGAA 2474 40.34 MDNGTSNSSTESAVNNSAPKVDSQSSKGDNLISILSTSGISSWAKSFRNPQPPEAAENDSKAGSSGMSAIARFSSGFGLRIPAMSPAQGDGAADTKSAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHISSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTGSAGKGSDRASGQDAAQSNSNKISGGEENDDNLFSDSDEENGDIKTSLAQSTSGTGNGTSKADHSSTTMASERIGNLAHETSHLSLGNEKNSQPNAPKEPAVIQPSSLEITNLDSVRASDFKAIAADASFFTFGDEEDFDSE 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18342305 18347355 + XM_039025596.1 Bhi03g00963 29740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00963 600 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311|GO:0016791
Bhi03g00963 600 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 5 600 - -
Bhi03g00963 600 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Bhi03g00963 600 MobiDBLite consensus disorder prediction 542 563 - -
Bhi03g00963 600 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Bhi03g00963 600 MobiDBLite consensus disorder prediction 469 488 - -
Bhi03g00963 600 CDD PTP_PTEN 145 310 IPR045101 GO:0016791
Bhi03g00963 600 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 600 - -
Bhi03g00963 600 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Bhi03g00963 600 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Bhi03g00963 600 MobiDBLite consensus disorder prediction 502 527 - -
Bhi03g00963 600 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311|GO:0016791
Bhi03g00963 600 MobiDBLite consensus disorder prediction 42 66 - -
Bhi03g00963 600 MobiDBLite consensus disorder prediction 456 527 - -
Bhi03g00963 600 SMART PTEN_C2_2 319 447 IPR014020 -
Bhi03g00963 600 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00963 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101213277 1104.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00963 Bhi-Chr3:18342305 Bhi05g01088 Bhi-Chr5:39354643 0 dispersed
Bhi03g00963 Bhi-Chr3:18342305 Bhi02g00293 Bhi-Chr2:5505982 3.28E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 8.9e-191 664.5
Bhi05g01088 . 43 614 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 2.4e-180 629.8
Bhi11g02950 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02948 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02949 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.0 0.0e+00 1184.9
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT3G10550 69.8 5.9e-299 1024.2
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.5 0.0e+00 1120.1
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT5G04540 68.0 3.6e-288 988.4
Bhi02g00881 . 1 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 53.6 2.8e-313 1072.4
Bhi09g01578 . 82 389 Protein tyrosine phosphatase (PTP) family AT1G71860 67.1 8.1e-122 434.5
Bhi09g01577 . 82 389 Protein tyrosine phosphatase (PTP) family AT1G71860 67.1 8.1e-122 434.5
Bhi02g00621 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.9 0.0e+00 1097.0
Bhi12g01807 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi12g01805 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi12g01806 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 56.5 1.6e-41 166.8
Bhi05g02087 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 3.4e-71 265.4
Bhi05g02088 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 3.4e-71 265.4
Bhi07g00747 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 2.3e-114 409.5
Bhi07g00476 . 99 325 Protein tyrosine phosphatase (PTP) family AT3G10940 78.1 1.9e-108 389.8
Bhi11g01647 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 3.8e-204 708.4
Bhi11g01648 . 2 450 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 3.8e-204 708.4
Bhi11g01646 . 141 550 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 8.9e-185 644.0
Bhi10g01060 CCT 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.5e-75 280.4
Bhi05g02096 . 28 236 Protein tyrosine phosphatase (PTP) family AT2G32960 62.6 1.7e-71 266.9
Bhi05g02097 CCT 28 206 Protein tyrosine phosphatase (PTP) family AT2G32960 62.1 3.2e-70 262.7
Bhi02g01339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.0e-55 212.2
Bhi11g00051 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.6e-101 367.1
Bhi06g01678 . 106 357 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 1.2e-80 297.7
Bhi06g01678 . 121 312 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 2.0e-45 179.9
Bhi10g01060 CCT 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 2.5e-78 289.3
Bhi05g02097 CCT 27 206 Protein tyrosine phosphatase (PTP) family AT4G03960 71.7 5.3e-73 271.6
Bhi05g02096 . 27 236 Protein tyrosine phosphatase (PTP) family AT4G03960 61.4 3.0e-68 255.8
Bhi02g01339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 6.3e-58 221.5
Bhi02g01339 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 1.7e-79 293.1
Bhi10g01060 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 2.1e-56 216.5
Bhi05g02097 CCT 35 201 Protein tyrosine phosphatase (PTP) family AT3G02800 56.9 1.5e-54 210.3
Bhi07g00941 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00939 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00938 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00937 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi07g00940 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 9.1e-60 229.6
Bhi11g02950 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02948 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi11g02949 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 2.9e-158 555.8
Bhi05g01088 . 33 614 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.8e-220 761.1
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G19420 62.2 6.6e-199 691.4
Bhi03g00963 . 33 600 Protein tyrosine phosphatase (PTP) family AT3G50110 61.8 8.9e-191 664.5
Bhi05g01088 . 43 614 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 2.4e-180 629.8
Bhi02g00881 . 1 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 53.6 2.8e-313 1072.4
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT3G10550 69.0 0.0e+00 1184.9
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT3G10550 69.8 5.9e-299 1024.2
Bhi04g01281 . 1 857 Protein tyrosine phosphatase (PTP) family AT5G04540 65.5 0.0e+00 1120.1
Bhi04g01282 . 1 720 Protein tyrosine phosphatase (PTP) family AT5G04540 68.0 3.6e-288 988.4
Bhi10g00068 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.8 2.1e-69 260.0
Bhi11g00140 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 3.4e-111 399.1
Bhi11g00141 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 3.4e-111 399.1
Bhi03g02108 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 2.3e-285 978.8
Bhi03g02108 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.0e-258 890.2
Bhi03g02108 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.9 8.6e-186 647.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00963 Bhi_Chr03 FPKM 58.044632 58.661331 29.528389 28.204903 38.527676 31.574476 35.869877 26.730213 30.615685 28.021688
       

Metabolome

Select Formula Compounds CID Class I Class II CAS cpd_ID kegg_map
C30H44O7 Cucurbitacin D 5281318 Terpenoids Triterpene 3877-86-9 C08796 ko00996,ko01110