Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01052 GTCCCTCCCATTCTCAATTTCCCACTTTTTTCTCTTCTCTCTAAAGCTATTTCCTCTTCATTCTTCCTTTTTTCTATCATTTGTTCGTTCCTCCCAAGATTCGGCTTGTTTGGATGACGATGTGACCGGACCGCGAAATTTATCCGCTTCAAAATAATTTATCGGATCTTTCTTTCGATCAGGCGCGCGCACACTCTTAAATTGCCGGAAAAACGTTTAGTACAATCTGAGCGACAAAAAAATGGTTTAAGCTCCGGGCTTTCTTTCTTTCGGAAGTTCAACCCAACTACGAGATTCTATTGTTCCCTATTTCTTGTAAGTGTCGGGTGGGCTTTTGCAAATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTCACAGATCCTGAGTTCAGTTCAATTTTGCATCAACGTTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCATAAAACAACATGATAATCCTATGCCTGTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTAGCAATTTCGAATGGGACAATTCGCTCTAATGGTCCAAAAGAGCCACTAGCAAGACTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACAAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACCGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGGATTGCTCCAAATTCTCCCTTGTCTGGAAGAAGAAGTGCTCCATTGTTACTTCTTGAGGACAAGCAGATGGATTCTTCAAAGACCGAGAAGAATGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAGGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCGGAAGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTACTTCTCCAAGGCAATGTGTTCTGAGAAGATGAAGGTGCTGCTGCTGCTACATTTCCATGTGCAAGTGAATGTAACTAAACTGTAGATATTGTTAGCATTGTAAATCTGCAGAATATGATTGCCTTATGAGAAAGACGGCTTCTGGGGTTCATATCATCGGAAGTGCATGTCGGTAATGTGATTTTAGATTCAAACAAAGAGCAAAGGATTTTGGAAAGAACAATGCGTTCTTAATCTGAAAATGGTGTTTTCTCGCCAGATTGTCTTTATGATTCCAAGAGAAATCAAACCTGTAAATTAATATTT 1543 42.0 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKQHDNPMPVSTVLQNEEIVDAKPLAISNGTIRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPQNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLSGRRSAPLLLLEDKQMDSSKTEKNEVKIITKSQVDSELSKMRVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFPSRSPVQKVLLQGNVF 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20905829 20919376 - XM_039027994.1 Bhi03g01052 29829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01052 306 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bhi03g01052 306 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bhi03g01052 306 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi03g01052 306 Gene3D - 2 59 - -
Bhi03g01052 306 Gene3D - 118 192 IPR036388 -
Bhi03g01052 306 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Bhi03g01052 306 CDD SANT_TRF 6 57 - -
Bhi03g01052 306 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Bhi03g01052 306 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi03g01052 306 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Bhi03g01052 306 SMART sant 4 59 IPR001005 -
Bhi03g01052 306 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Bhi03g01052 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bhi03g01052 306 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi03g01052 306 Coils Coil 240 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01052 K09422 MYBP; transcription factor MYB, plant - csv:101202913 492.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01052 Bhi-Chr3:20905829 Bhi11g01127 Bhi-Chr11:32919601 1.57E-91 dispersed
Bhi03g01051 Bhi-Chr3:20905829 Bhi03g01052 Bhi-Chr3:20905829 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01127 . 1 295 Single Myb Histone (SMH) Gene Family AT1G49950 66.2 4.2e-82 302.4
Bhi11g01126 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 1.1e-77 287.7
Bhi11g01125 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi11g01128 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi01g02738 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.0 2.0e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
624 PF00538 Linker_histone 1.50E-11 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01052 Bhi_Chr03 FPKM 2.236537 2.870895 0.666783 0.363135 0.0 0.0 0.271066 0.0 0.0 0.0