Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01231 TCAAAATGGAGAAGGCTGTGGCCATTTTGGGAAGAAGGACATTCAACCACTTTCTGGTCTCCACTTCTAGACCATCTCTTGCTTTCTTCTTGCTTCACCATAATTATTCTCTCACAGTTTCTAAATCCTCTGGGGGTACCCGCACGAAGGGGGAGACGGCATATACATGGAGATGTCCTATTTCTTCTTCATGTTCTCCTAATTCTCCTCCACTTTTTTCGCCCATTTTCTGTGTTTTCCCTTTCTTAATTCCTAATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCTCCGGCGCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAACAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCAAAGTATGTTCATAGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCTCACTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCCGTTGCTGACAGGAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGACATATTTTGTAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGATTTTGATAGCAAAATTAGTTTTTATTACATATGCGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGAAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTTTGCGCCGACTGCCATTTACCTGGTACTCTTTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGATTGCCATTATTATTTATAATGGCCTTAGTTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTCGCAAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTTGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAACTGAAAACTCTTGGCCTTTTATGAAATGAAATGGGTAAGTTATCATTTTGTCCTGAAGAGCACCTGTTGAAGCTTGAACTGACCATATGCTTTTGCTGCTGAGTTGCACTTTTTTACTCTGGACAAAGAAAGTCTTATACATATGCTCACAAAATATGTCACAGCCTCTGCTTTTCTTCTGTATGTTAGAATGGCTAGCTTTTGTCTTATCCGTGTGAGAAAATGGGAACGAATTTGAATACCAAGAAATCAAAACTGACAAAAGTCTAAAACTTTATTATTTTAACATTTCTCTTACAGAGTATAAAGTGTATTTGTGAATTGACTA 1531 41.54 MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYFVDGCQHYWLRLTWDFDSKISFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25261354 25266928 - XM_039027827.1 Bhi03g01231 30008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01231 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Bhi03g01231 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Bhi03g01231 323 SMART ringv_2 34 83 IPR011016 GO:0008270
Bhi03g01231 323 PANTHER BNAA04G12620D PROTEIN 6 323 - -
Bhi03g01231 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
Bhi03g01231 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 323 - -
Bhi03g01231 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Bhi03g01231 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02879 Bhi-Chr1:71482006 Bhi03g01231 Bhi-Chr3:25261354 8.96E-12 dispersed
Bhi01g02880 Bhi-Chr1:71482010 Bhi03g01231 Bhi-Chr3:25261354 8.96E-12 dispersed
Bhi02g01051 Bhi-Chr2:23725077 Bhi03g01231 Bhi-Chr3:25261354 4.46E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01231 - - csv:101214008 662.529