Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01269 ATTACATGAAAATATCGAGGCAGTTCTGCGAAAATAGTAAAATAAAAATTCTTCCATAATTCAAAATTCTCCACATATTTCATTTTATTCCGCTATAAATAAGTTGCAACGCAATCCCCGTGTAAACCATCCACCAAACTTCTCATACCAATCCACATACCAAAAAAAAAAAAAAAAAAAACAAAGAAACGAAAAAAAAAACCTTCACCGCCGGTGACAATGGCCGCCGTGAATCTCCGACCCGACGGTGACAATTCACTACTCATTTCCCATCTATACAACCCTGAAATTTACACCCAAATGTTACCCCAACAAGATACGGCAGAGGGAAATAAGCCGACGAAGCGGCGGCGGGAGGAGGAGCAAAGCGAAGAGGGCGGGGGGGCTGGGGCGGCGGGTTGAAGAAGAGGAAGCTTGAGTTCAGAGCAAGTGAAGCTGTTGGAGATGNNATTTTGGAGTGAACACAAATTGGAATCGGAGAGGAAAGATCGATTGGCTTCGGAATTGGGACTTGATCCACGGCAAGTCGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGATGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTTTGTTCTTCTAACAAAAATCCCATCTTGAATCTGAGATGGTGAAGCTGAAAGAGCAATTGGCAGAAGCAAAGAATGAAATTAAAAAATTAGTAGAAGGAAGCGAGAGAATATCAAGCAATAATAGTCCAAGCTCTTCGGTGACAATGGAAGCAATGGAGGAAGCAGTGCCTTTGGGAGAGCTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATGCAAGAACACAATTACAATCAAGGAATGGACTGGCTTAATCTTAATTATATGTAGATTAATTTAGATATTTATTATGTAATTCACTAATTAATTACTCTTTAGTTTTGTGGATATAGTCATAGAATATTAGATCATCTAATGTACATCTCTCTCCCTCTCTTTCCTTCTCTCTAACTAGTGTTATTTTTCAGAACTTGGAATTAATTAAGGATATAATTAATTGTCTAATTATCTC 1069 38.73 MAAVNLRPDGDNSLLISHLYNPEIYTQMLPQQDTAEGNKPTKRRREEEQSEEGGGAGAAGXRRGSLSSEQVKLLEMXFWSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKMEEEYSTLKKAHDSLFFXQKSHLESEMVKLKEQLAEAKNEIKKLVEGSERISSNNSPSSSVTMEAMEEAVPLGELFLEEYEDVFYCMQEHNYNQGMDWLNLNYM 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26265318 26267708 + XM_039027197.1 Bhi03g01269 30046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01269 222 Pfam Homeodomain 62 116 IPR001356 GO:0003677
Bhi03g01269 222 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Bhi03g01269 222 MobiDBLite consensus disorder prediction 37 52 - -
Bhi03g01269 222 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Bhi03g01269 222 MobiDBLite consensus disorder prediction 26 66 - -
Bhi03g01269 222 Gene3D - 57 130 - -
Bhi03g01269 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 219 IPR045224 GO:0003700
Bhi03g01269 222 Coils Coil 138 172 - -
Bhi03g01269 222 CDD homeodomain 65 118 IPR001356 GO:0003677
Bhi03g01269 222 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Bhi03g01269 222 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Bhi03g01269 222 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Bhi03g01269 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 11 219 - -
Bhi03g01269 222 Coils Coil 109 129 - -
Bhi03g01269 222 SMART HOX_1 59 121 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01269 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101216890 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01269 Bhi-Chr3:26265318 Bhi06g00500 Bhi-Chr6:11282328 2.80E-23 dispersed
Bhi03g01269 Bhi-Chr3:26265318 Bhi06g00499 Bhi-Chr6:11282328 2.80E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g927 Blo04g00927 Blo16g00037 Bda04g00064 . . Bpe13g00454 . . Cmo04g00828 . Cma03g00769 Cma07g00504 . Car07g00441 Sed07g1686 Cpe19g00797 . Bhi03g01269 Tan03g1958 Cmetu07g2129 . Hepe04g1489 . . Cla01g01886 Cam01g1978 Cec04g1629 Cco04g1694 Clacu01g1998 Cmu01g1868 Cre04g1550 Cone8ag0797 Cone12ag0756 . Cone9ag1531 Lsi01g00699 . Chy07g01276 Cme08g00826 . Blo06g00125 Bda11g01876 . Bpe10g00106 Bpe06g00054 . Bma06g00130 . Cmo03g00798 . . . . . . . . . . . . . . Cla07g00851 Cam07g0923 Cec07g0983 Cco07g0966 Clacu07g0899 Cmu07g0899 Cre07g1264 . Csa06g03219 Chy02g00668 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002434 2 1 3 1 3 2 2 2 2 2 2 2 3 2 2 1 2 3 3 2 2 2 2 2 2 1 2 3 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
650 PF00046 Homeodomain 5.90E-17 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01269 Bhi_Chr03 FPKM 6.913043 6.937922 13.649356 15.407444 11.249382 8.089567 10.479564 1.399925 1.458351 0.96344