Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01275 TTCAATGCTTCTGCTCAACAATGAAGAAATGCACTGCAATTTCAGGATCCCCATCTTCACCTTCCTTTCTTATCTCCATCTTATTCCTTTTCCTCTCTCTTCCTACAAATGCCGATGACGGATGGTGGGAAACAGACAGTCCTGTAGTGAAGAGAGCCAATGAAAGAATCCCACTCCTTAAAACTGAGTACGGTGAGATCTCCACCGTTGATTTCGCCGATGGCTCTCGATTCGGACATTACCATCTTCAGTTCATCACATTGGAACCCAACTCCCTGTTTCTCCCTGTTCTTCTTCATGCTGACATGGTGTTCTATACTCACACTGGAAGTGGGAGATTGAGTTGGTTTGATGACGATGATCTGAGGGAGGTGGATATACGGCGGGGAGATATTTACAGGCTCCATCCAGGCTCCATTTTTTATTTGCAGAGTAACTTAGAGACCGAACGTGAAAAGCTTCGAATCTATGCTCTGTTTTCCAGCACAGATGAGGATTCATTCAACCCCTCCATCGGAGCATACTCGCGCGTCACCGATCTGGTTCGTGGCTTCGACAAAGAAGTTCTGCGTAAAGCTTTCATGGCCCCCGAAGAAGTAATAGAGGAAATAATGAACGCGAAGAGGCCGCCACTGATCGTTCACGCTGCGACAACTCCGAGCAAGAAGAAGAAGAAGGTGGCGGCGGTGGCATGGGAATTAGAAGCTCGGTTATTGAAAACCTTCATAGGAGGAGCAAGTGGGATGGAATTCAACAAGAAGAAGAAGAAAGGCGTATACAACGTTTATGAAGTAGACCCAGATTTTGAAAATTGCAATGGATGGAGTTTGACTGTAACCAAGAAAAATTCCCATCAGTTAAAAGGCTCCAACATCGGTTTCCTCGTAGTCAACCTCACATCGGGTTCGATGATGGGTCCGCATTGGAATCCATGGGCATGGGAGATTGGGATCGTGACGTCGGACGAGCCGGGGGTGGTTCGGGTCGGGTGTTCGAGCACAAAGAATAGTTCAAAATGCAAGAATTGGAGTTTTGTAGTAGGGAAAGGGGATGTATTTGTAGTGCCAAGGTTCCATCCAATGGCGCAGATGTCATTTAACAATGGAACGTTTGTTTTTGTTGGATTTAGCACGACGAATGGACATAACATGCCGCAGTTTTTAGCTGGAAGTAGCTCTGTATTGCAGATTGTGGACAGGGAAGTGTTGGCGTGGTCGTTTGATGTGAATGTCACAACGGTTGATCGTTTGTTGGGAGCAAGAGTTGAGTCCATCATATTGGAGTGTACTTCTTGTGCAGAAGAAGAAGTGAGGAAAATGGAAGAGGAGGCTGAGAGAGAGAGAGAAGAGGAGGAAGAAGAGAGGAAGAGGGAAGAAGAAGAAGAGAGGAAGAGAGAGGAAGAAGAGAGGAAGAGGGAAGAAGAAGAAGAGAGGAAGAGAGAGGAGGAAGAGAGGAAGAGGGAAGAAGAAGAAGAAGAGAGGAAGAGGGAAGAAGAAGAAGAGCGGAAGAGGGAAGAAGAAGAAGAGCGGAAGAGGGAAGAGGAGAGGGAGCAAGAGGAAGAGAGGAGGAGAGAAGAGGAGGAAGCAAAGAGGGAGGAAGAGAGGAGGAGGAGAGAAGAGGAAGAGAGAAGAGAGGAGAAGGAAGAAGAAAGGGGAGAAAGAGAGGCAAAGAGAGAGGAGGAGGAAGCAAGGGAGAGAGAGGAAACCCATCAGAGAGAGAGAGGGAGAAGACGCAGAGAGACGGAGAGAGAGGCAGAGGAAAGACAGAGAAGACGTTGGGAGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAGCAGCCAAGACTTAGAATTTTGGGAGTACGGGCGTAACTCAAAACTCGTTTCAATTTGGTGTCATCAAACTTTGTGCTATAGTGAATAACAGAACAGAAACGTAATTGAGATGAAAAACAAAAAAAAAATGTCACATTGTGTGTTTTAAGTTTCCAAGTTTTGTCGTTTAACGAAGGCAGCTTCAAGAAACACGTGTGTTTGTTTACTTGAAGATTTTGAAATTCTCGTCTTTTGGCTTTTGGTGGA 2057 45.84 MKKCTAISGSPSSPSFLISILFLFLSLPTNADDGWWETDSPVVKRANERIPLLKTEYGEISTVDFADGSRFGHYHLQFITLEPNSLFLPVLLHADMVFYTHTGSGRLSWFDDDDLREVDIRRGDIYRLHPGSIFYLQSNLETEREKLRIYALFSSTDEDSFNPSIGAYSRVTDLVRGFDKEVLRKAFMAPEEVIEEIMNAKRPPLIVHAATTPSKKKKKVAAVAWELEARLLKTFIGGASGMEFNKKKKKGVYNVYEVDPDFENCNGWSLTVTKKNSHQLKGSNIGFLVVNLTSGSMMGPHWNPWAWEIGIVTSDEPGVVRVGCSSTKNSSKCKNWSFVVGKGDVFVVPRFHPMAQMSFNNGTFVFVGFSTTNGHNMPQFLAGSSSVLQIVDREVLAWSFDVNVTTVDRLLGARVESIILECTSCAEEEVRKMEEEAEREREEEEEERKREEEEERKREEEERKREEEEERKREEEERKREEEEEERKREEEEERKREEEEERKREEEREQEEERRREEEEAKREEERRRREEEERREEKEEERGEREAKREEEEAREREETHQRERGRRRRETEREAEERQRRRWEEEKEEEEEEEQPRLRILGVRA 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26365541 26368049 + XM_039026729.1 Bhi03g01275 30052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01275 608 Coils Coil 423 598 - -
Bhi03g01275 608 MobiDBLite consensus disorder prediction 477 608 - -
Bhi03g01275 608 Pfam Cupin 253 407 IPR006045 -
Bhi03g01275 608 CDD cupin_7S_vicilin-like_N 52 209 - -
Bhi03g01275 608 PANTHER OS03G0336100 PROTEIN-RELATED 15 467 - -
Bhi03g01275 608 Gene3D Jelly Rolls 242 425 IPR014710 -
Bhi03g01275 608 PANTHER PREPROMP73 15 467 - -
Bhi03g01275 608 SUPERFAMILY RmlC-like cupins 16 414 IPR011051 -
Bhi03g01275 608 Gene3D Jelly Rolls 37 222 IPR014710 -
Bhi03g01275 608 SMART Cupin_1_3 44 195 IPR006045 -
Bhi03g01275 608 SMART Cupin_1_3 253 408 IPR006045 -
Bhi03g01275 608 CDD cupin_7S_vicilin-like_C 260 417 - -
Bhi03g01275 608 MobiDBLite consensus disorder prediction 477 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01275 - - - csv:101216660 719.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00788 Bhi-Chr1:14827446 Bhi03g01275 Bhi-Chr3:26365541 3.64E-11 dispersed
Bhi03g01275 Bhi-Chr3:26365541 Bhi10g00574 Bhi-Chr10:12690103 5.46E-53 dispersed
Bhi03g01275 Bhi-Chr3:26365541 Bhi09g01073 Bhi-Chr9:24914324 1.39E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01275 Bhi_Chr03 FPKM 5.650126 6.340183 5.674981 5.212027 4.62153 3.708425 5.380332 0.24023 0.305382 0.385656