Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01287 CTCTACTCTAGCTCCCTTGGGGGAAACTTTCCTTTTCTTTTCTTTTCTTTTTTAATATCTTCTAATCTATCTCTGAGTTTACTCTCTCTCTTTCTCTCTCTGTTCTCTCTCGCATAAACAGCCTTACCGACGACCTCGCCGCCGTGATCTGTTCACTACCGGCGATTTCCAATTCTATTTTTGTTTTGGCCGGAAAATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCTCAGCAAGTCATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCAGCACCCACAGCACCCGCCGCAGCAGCTCACTGGACCCTGTACTTTCGGTCTGAACCCATGGAATGGTCCGAACCATGCTCTATCCGCTGCTCCAGATTTGGGATTTGGACTTCCTGGTGCTGGATTTTCCGACCCGTTTCAGGTGCAGAGAGTGGTCGACGGTGGAGAAACGAGCTTTCAGTTTTCGAACTTGGAGCACCATTCTCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTTGATTCTGATGAGTGGATGGAGAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGATGCGACGCGTGGCAGTCTAATTCAGATTTCGCTTTCTACAGTGTCGATCCCTTTGTCCCCTGTCCCAGTCGTCTCACCATCCCCTGCTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGACTCGCCCAAAAGTGAACCCGCCGTTGAACCGGCAGTGGTCTCGTGGACCGGGATTCACCCAGCGACTCCATCGGCGGTGGTTAAGGACATTCAAGTCTCCAACCCTCCCCTTGCCATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTGTAGAGACTGAATCGACTCCGCCGCTGCTTAAAACCCTAATTGAATGTGCTCGACTTTCCGAATCGGAGCCAGGTCGAGCGGGGCAAACGTTGATTAAGCTTAAGGAATCGTCATCGGAGCAGGGAGATCCGACGGAGAGGGTCGCCTTTTACTTTCTGGAAGCCCTTTGCCGGAGATTATCACTTCGATCGAAGAATCATTCGGTTTCTTGCGGATCCACTTACGAAGATATTACACTCTCTTACAAAGCACTCAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGAGAATGCAAGTAAGATTCACATAATTGACTTCGGGATTGCTCAGGGAGTTCAATGGGCGGCGCTTTTACAAGCTCTTGCAACCCGATCCACCGGAAAACCAACCGGAATTCGGATCTCCGGCATTCCGGCTCCGATGCTTGGTAACTGTCCGGCGACGGGGCTGTTCGCAACGGGTAACCGACTAGCCGAGTTTGCAAAGCTTCTGGAACTAAACTTCGAATTTGATCCAATTCTCACTCCAATCGAAGAACTGAACGAATCATCCTTTCTAATCAACACAGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTACAACTAGCCAAATCACTGAACCCTAAAATCATAACCCTCGGCGAATACGAAGCGAGCCTAAACCGGGTCGGGTTCTTCAACCGGTTCAAGAACGCACTCAGATACTACTCAGCCGTGTTCGAATCACTGGACCCAAAACTACCTCGCGACTCAAACGAAAGGCTGCAACTGGAAAAGCTCGTACTCGGCCGGCAAATCGGCGCCCTTGTCGGACCGGAATCGTCACCGGGAGCGAAAACCGAACGAATGGAAAACAAAGAAGAGTGGAAAATGTTAATGGAAAATTCTGGATTTGAATCAGTAAATCTCAGTCATTATGCGAAAAGCCAAGCTAAAATCCTGTTATGGAAATACGATTACAGCTCTGAATATTCATTAATGGAATCCTCAGGGTTTCTCTCGTTGGCATGGAACGAAGTCCCAATCATTACAATTTCTTCATGGCGTTGAAAGCAACAGCTTCAAAGCCTCAGGTAACCGTATTTGTTTATTACATTATTATAAAATTGTTCCCTTTTTGCCTATTCCCTCTTCTGTTCTGTAAAAAAGAATGACATTAAGATTTGAGAATCACATACCGCCATTCACGATCTTAA 2169 47.86 MANMCADSGNLMAIAQQVMKQKQQQEQQQQHPQHPPQQLTGPCTFGLNPWNGPNHALSAAPDLGFGLPGAGFSDPFQVQRVVDGGETSFQFSNLEHHSPAFRFSDFDGGTAAEFDSDEWMESLMAGGDSTDSSNLPSGCDAWQSNSDFAFYSVDPFVPCPSRLTIPCSSPSDLNRVIFPDSPKSEPAVEPAVVSWTGIHPATPSAVVKDIQVSNPPLAILKSEDNGGSSSSVETESTPPLLKTLIECARLSESEPGRAGQTLIKLKESSSEQGDPTERVAFYFLEALCRRLSLRSKNHSVSCGSTYEDITLSYKALNDACPYSKFAHLTANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPTGIRISGIPAPMLGNCPATGLFATGNRLAEFAKLLELNFEFDPILTPIEELNESSFLINTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIITLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSNERLQLEKLVLGRQIGALVGPESSPGAKTERMENKEEWKMLMENSGFESVNLSHYAKSQAKILLWKYDYSSEYSLMESSGFLSLAWNEVPIITISSWR 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26684067 26686348 + XM_039026809.1 Bhi03g01287 30064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01287 608 MobiDBLite consensus disorder prediction 17 46 - -
Bhi03g01287 608 ProSiteProfiles GRAS family profile. 231 608 IPR005202 -
Bhi03g01287 608 Pfam GRAS domain family 241 608 IPR005202 -
Bhi03g01287 608 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 241 607 IPR005202 -
Bhi03g01287 608 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 241 607 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01287 - - - csv:101218550 1075.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01287 Bhi-Chr3:26684067 Bhi10g01322 Bhi-Chr10:31705230 1.82E-61 dispersed
Bhi03g01286 Bhi-Chr3:26684065 Bhi03g01287 Bhi-Chr3:26684067 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02267 . 74 753 GRAS Transcription Factor Family AT2G37650 54.5 6.5e-198 688.3
Bhi11g02266 . 74 753 GRAS Transcription Factor Family AT2G37650 54.5 6.5e-198 688.3
Bhi08g00587 . 317 699 GRAS Transcription Factor Family AT3G46600 56.7 2.1e-127 453.8
Bhi11g02267 . 295 753 GRAS Transcription Factor Family AT3G46600 50.1 2.9e-121 433.3
Bhi11g02266 . 295 753 GRAS Transcription Factor Family AT3G46600 50.1 2.9e-121 433.3
Bhi03g01023 . 49 468 GRAS Transcription Factor Family AT3G49950 60.5 1.1e-136 484.2
Bhi11g00199 . 419 791 GRAS Transcription Factor Family AT3G60630 50.6 1.6e-91 334.7
Bhi01g03046 . 54 450 GRAS Transcription Factor Family AT5G41920 67.9 2.1e-148 523.1
Bhi03g02273 . 447 839 GRAS Transcription Factor Family AT5G41920 55.5 5.1e-115 412.1
Bhi03g01287 . 1 608 GRAS Transcription Factor Family AT5G66770 58.1 1.2e-176 617.5
Bhi03g01286 . 1 608 GRAS Transcription Factor Family AT5G66770 58.1 1.2e-176 617.5
Bhi01g02434 . 1 584 GRAS Transcription Factor Family AT5G66770 56.6 3.5e-173 605.9
Bhi10g01328 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01326 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01327 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01324 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01325 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01323 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01322 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01329 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi11g00497 . 45 543 GRAS Transcription Factor Family AT1G50600 58.5 3.6e-161 565.8
Bhi03g00665 . 109 546 GRAS Transcription Factor Family AT1G50600 57.4 8.9e-144 508.1
Bhi09g01957 . 221 591 GRAS Transcription Factor Family AT1G50600 61.5 5.4e-133 472.2
Bhi11g00394 . 1 639 GRAS Transcription Factor Family AT1G63100 50.3 3.8e-160 562.8
Bhi12g00914 . 44 582 GRAS Transcription Factor Family AT1G14920 68.3 1.4e-208 723.4
Bhi12g01253 . 46 596 GRAS Transcription Factor Family AT1G14920 60.5 2.4e-181 632.9
Bhi01g01936 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 3.8e-158 555.8
Bhi11g00376 . 36 407 GRAS Transcription Factor Family AT1G55580 50.6 3.8e-103 372.9
Bhi12g01253 . 1 593 GRAS Transcription Factor Family AT1G66350 58.5 2.2e-179 626.3
Bhi12g00914 . 1 580 GRAS Transcription Factor Family AT1G66350 57.4 1.6e-174 610.1
Bhi01g01936 . 1 554 GRAS Transcription Factor Family AT1G66350 55.7 3.0e-160 562.8
Bhi10g00730 . 198 722 GRAS Transcription Factor Family AT1G07520 50.2 7.9e-140 495.0
Bhi10g01328 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01326 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01327 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01324 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01325 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01323 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01322 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01329 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi11g00497 . 17 543 GRAS Transcription Factor Family AT5G48150 58.2 1.6e-171 600.1
Bhi03g00665 . 14 546 GRAS Transcription Factor Family AT5G48150 52.1 2.9e-152 536.2
Bhi09g01957 . 221 591 GRAS Transcription Factor Family AT5G48150 62.9 6.4e-136 481.9
Bhi12g00914 . 46 579 GRAS Transcription Factor Family AT2G01570 68.8 2.2e-212 736.1
Bhi12g01253 . 48 594 GRAS Transcription Factor Family AT2G01570 62.1 2.0e-184 643.3
Bhi01g01936 . 31 555 GRAS Transcription Factor Family AT2G01570 58.5 1.6e-162 570.5
Bhi12g01253 . 1 593 GRAS Transcription Factor Family AT1G66350 58.5 2.2e-179 626.3
Bhi12g00914 . 1 580 GRAS Transcription Factor Family AT1G66350 57.4 1.6e-174 610.1
Bhi01g01936 . 1 554 GRAS Transcription Factor Family AT1G66350 55.7 3.0e-160 562.8
Bhi12g01253 . 48 594 GRAS Transcription Factor Family AT3G03450 61.2 1.7e-177 620.2
Bhi12g00914 . 46 579 GRAS Transcription Factor Family AT3G03450 60.6 8.1e-172 601.3
Bhi01g01936 . 31 555 GRAS Transcription Factor Family AT3G03450 57.8 4.7e-156 548.9
Bhi12g01253 . 42 596 GRAS Transcription Factor Family AT5G17490 56.0 1.1e-157 554.3
Bhi12g00914 . 42 579 GRAS Transcription Factor Family AT5G17490 56.9 7.7e-156 548.1
Bhi01g01936 . 28 555 GRAS Transcription Factor Family AT5G17490 53.1 7.3e-138 488.4
Bhi09g01484 . 1 570 GRAS Transcription Factor Family AT1G21450 57.0 1.9e-171 600.1
Bhi09g01483 . 1 570 GRAS Transcription Factor Family AT1G21450 57.0 1.9e-171 600.1
Bhi09g01482 . 1 570 GRAS Transcription Factor Family AT1G21450 57.0 1.9e-171 600.1
Bhi11g00497 . 167 543 GRAS Transcription Factor Family AT1G21450 52.4 8.3e-114 408.7
Bhi08g00587 . 325 699 GRAS Transcription Factor Family AT5G59450 57.3 9.4e-129 458.4
Bhi11g02267 . 304 753 GRAS Transcription Factor Family AT5G59450 50.3 6.5e-122 435.6
Bhi11g02266 . 304 753 GRAS Transcription Factor Family AT5G59450 50.3 6.5e-122 435.6
Bhi03g00665 . 36 546 GRAS Transcription Factor Family AT4G17230 61.7 1.4e-176 617.1
Bhi11g00497 . 49 543 GRAS Transcription Factor Family AT4G17230 52.1 1.6e-137 487.3
Bhi09g01957 . 218 591 GRAS Transcription Factor Family AT4G17230 52.7 5.3e-112 402.5
Bhi10g01328 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01326 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01327 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01324 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01325 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01323 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01322 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01329 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi11g00497 . 147 543 GRAS Transcription Factor Family AT2G04890 59.4 4.5e-143 505.4
Bhi09g01957 . 221 591 GRAS Transcription Factor Family AT2G04890 59.8 4.1e-128 455.7
Bhi03g00665 . 139 546 GRAS Transcription Factor Family AT2G04890 56.4 2.3e-126 449.9
Bhi02g01502 . 1 471 GRAS Transcription Factor Family AT1G50420 66.7 1.6e-176 616.7
Bhi07g00891 . 12 473 GRAS Transcription Factor Family AT1G50420 61.1 8.4e-157 551.2
Bhi07g00888 . 12 473 GRAS Transcription Factor Family AT1G50420 61.1 8.4e-157 551.2
Bhi07g00890 . 1 462 GRAS Transcription Factor Family AT1G50420 61.1 8.4e-157 551.2
Bhi07g00889 . 6 459 GRAS Transcription Factor Family AT1G50420 61.7 2.5e-156 549.7
Bhi11g00199 . 428 791 GRAS Transcription Factor Family AT4G00150 55.0 8.1e-103 372.1
Bhi01g02434 . 1 584 GRAS Transcription Factor Family AT3G50650 51.8 7.8e-151 531.6
Bhi03g02273 . 182 837 GRAS Transcription Factor Family AT3G54220 60.4 3.9e-205 712.2
Bhi01g03046 . 83 448 GRAS Transcription Factor Family AT3G54220 63.9 3.6e-134 476.5
Bhi03g01039 . 106 492 GRAS Transcription Factor Family AT4G37650 67.9 1.7e-155 547.0
Bhi10g02098 . 97 485 GRAS Transcription Factor Family AT4G37650 56.5 3.8e-126 449.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
656 PF03514 GRAS 7.60E-108 CL0063 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01287 Bhi_Chr03 FPKM 28.632416 30.97769 9.669991 14.449506 14.041293 16.113356 17.65624 23.138607 19.363018 18.961828