Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01302 GCAGTAACTGAAACATCTTATAACTATACATCTTATAGAGCTGCTACCTATTTAAAAATTGAATATGGAAACAATTTCTTCTTTCTACTTCCAAACTAAAATCCAACGAAAGCAAGTCCACATAATTGCTACAAAATAATTTTCTTGTTCTTTTCTTGCGTTGAATTGAATTTTTCAGAATAATAGAGAAGCCTTTCTTGAAATGTAAGACACAAACCTGTAAACAGTAATAATGCAATATACGGTCCATAATCAACATTTCTAAGTCATGAAATAATATTCTTGAATAAGCCATTCGACCAAATTAGAAACTTTGTAATGTAGAAACAATGTACCCAACCCAAGCAACTCCTGCATCCCTCATTATAATAATTTACCAGTCACCAGAGAAATTTCCCAAGAAAGGCGGAGCACAAAACTGTTTAGAGTTGACGCTAGAACAGAAACAAAAGCAAAACTGCAGTAGGTAGTACAAAGAAATCAGTGAGGGATTGAAAATGTTAAGATATGGTCAAATTCAGAGTAAGTAATGGTAAAGAGTAAAAATAAGAAGATAGACCTAAAATTTAGGCATGGAGAGAAAGTGGGGTGGACCAAATAAAGCTATATAATGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAATGGGTAAAAACCAAGTGTGTATATGTGTATGTGTGTGTCGTACAAATTGGCGTGCAGTGTTTGATATCCCACCAAATGACCCAAAAGTTAGCGTTTGATATAAATGGTAAAGAGTGGAGACGTAGCAAAGTCTTCTGTTTAGGGGATGAGTGGAGTTGCAGAAACATAAAGACAGCCACAGCCAGCCTTGATGGAGAAAGAGAGAGAATCTGACACTACAGACATATGTGGGCCACCCTTCTCTTCACTTTAACCTCTTACAAAAACTCTCTCTCTCTGGGTTATTTTGTTTTTTGTTTTTGGCTAATCCTTTATTTTGAGGTAATTTGATGTTAGGGAGAGTTTTGAAGATCAAGTGCAGGAAAATTCAGCAGCCAAGTTGAATGTGTTGTCTTGTGTAGTGAGAGAACCAAGTTGTTTTTTTGTAGTTGGTTTTTGTCTCTAATCCTGCGCTTTCTTGCTGTCTTGCATATTTGAACACATTTATTAGGGAGTGGTTTAGGGTTTTCAGAAAGTGCCCAGAAAGGCAATTATTAGAAACAGGACCAAAGCTGCAGGCTATGGGAGATGACTAACATGACCTTGTCGGTTGTTCTGTTTGACTAAGCCATCACTTTTATTCTCCAAAAACTCACACCTGCGCCTTCCGATCTTGGCTTTGGGTGGCTGTTAGGAAACACAACAAACCCTTTTTTTTTCTTTTTTTGTTTTCCATCTTCTCCTAAACCCTTTCTTTCGTTATTTCCTTCTTTCTTTCCTATTGCTGCTTTTGCTGCTGCTACATCTTACTGCATATTTCTTCAATATTCCACTCTCACAATTAATCAAGGTAAGATTTTGATTGCAGAAGCTGTTCGTAGCACTTTCGGGAGTGATGAAGGATGCAAGAAAACACCAGAAATTAGTAAACGAATCTGGGAGTTTAATTAGCTATGCTACTAGTAGCTAATTAAGAAGATCATGATCAAAGGAGAGGTTAGGGTTGTTAATTTGTGGAAGATCCAAATGAATGTCCAAGGTAATGATGTGGTGATCAAGGTTTAGTTACTGGTAACCGAAAAGTAATAAAGCTAAGATTGATTACCTTTTGGGGTAGATCAGATATTATGGAGATGAGAGGTGAAGAGGAGGAAATAGGAACTCCTAAGTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACAGCCTAATTCTGATCGTCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCATCACACACTGAATCTTCATCATATACACAAACAACACACAAGAGACCAACATGAAGCAACCCCAGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTTACTCCACCGCCGATTGCCAGCGGTAGATTGATCTCAAGAACACCACCATTTCCAAGTGCAACGGACAACGGTATTCCTTCATCGGTAATTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGTGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCTTTGAAATGCGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGATGAAAGAAGAGGTGCCCTTGCAGCATGCTTTACCCAGCGGTTTCTTCATCTCCAACCCTGTCAGAAACAATGGCCATCGCACTGATAGGACACCAGTTGTTTCAGTGCCCCGTCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCTGGATGAATCTTCGAGTGAGGATCTGAACATGTATCACCCATCTAATAATGGAGCCCGGGACCTCTTCGGTCAGCAGACACAACTAATAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAAATTCAGAAACATGATGAACTGGAAGTGCAACAGTTCTGTGCTGAGGTGGGGGTAAGGAGACAAGTTTTCAAGGTTTGGATGCATAACAACAAACAAGCCATGAAGAAGAAACAAATGTAAGAATGTACTACAAGTTTTACCTTCAAACCCATTTCGTGAAAAATAATATATGTATCCATGATTGACTAAGTTCTAAGAACATAGATTTTATCCAGCAATTAGAGTAAGTCCTTAATTAGGCATTGAAAAGTGAGAAAGGTAATATTCGGTTCTTGAATGAACATCTCAATGTCATGTTACTTCCACTTCTAGAA 2969 39.61 MEMRGEEEEIGTPKSPLCYNNPSSNRESSTKQPNSDRPFLTTAADRRRDHTVPQLHFSHHHTLNLHHIHKQHTRDQHEATPDPPIQPSISASPPSAVTPPPIASGRLISRTPPFPSATDNGIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKEEVPLQHALPSGFFISNPVRNNGHRTDRTPVVSVPRHHQLPAVPISSMMMAFGGGSNGALDESSSEDLNMYHPSNNGARDLFGQQTQLIKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27021310 27024427 + XM_039026561.1 Bhi03g01302 30079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01302 334 Pfam ZF-HD protein dimerisation region 127 179 IPR006456 -
Bhi03g01302 334 Gene3D - 259 331 - -
Bhi03g01302 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 50 332 - -
Bhi03g01302 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 332 - -
Bhi03g01302 334 MobiDBLite consensus disorder prediction 66 97 - -
Bhi03g01302 334 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 270 327 IPR006455 -
Bhi03g01302 334 MobiDBLite consensus disorder prediction 16 39 - -
Bhi03g01302 334 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 128 179 IPR006456 -
Bhi03g01302 334 SUPERFAMILY Homeodomain-like 269 331 IPR009057 -
Bhi03g01302 334 MobiDBLite consensus disorder prediction 1 39 - -
Bhi03g01302 334 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 129 178 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01302 - - - csv:101220687 552.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02358 Bhi-Chr1:57657076 Bhi03g01302 Bhi-Chr3:27021310 1.51E-57 dispersed
Bhi02g00327 Bhi-Chr2:6016541 Bhi03g01302 Bhi-Chr3:27021310 1.75E-25 dispersed
Bhi03g01151 Bhi-Chr3:23235117 Bhi03g01302 Bhi-Chr3:27021310 3.21E-11 dispersed
Bhi03g01302 Bhi-Chr3:27021310 Bhi04g00174 Bhi-Chr4:4152079 1.45E-58 dispersed
Bhi03g01302 Bhi-Chr3:27021310 Bhi03g01303 Bhi-Chr3:27021310 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
658 PF04770 ZF-HD_dimer 9.80E-31 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01302 Bhi_Chr03 FPKM 1.118911 0.965695 2.921813 3.149904 4.193013 1.508166 4.00196 4.821522 4.327118 5.628412