Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01303 GCAGTAACTGAAACATCTTATAACTATACATCTTATAGAGCTGCTACCTATTTAAAAATTGAATATGGAAACAATTTCTTCTTTCTACTTCCAAACTAAAATCCAACGAAAGCAAGTCCACATAATTGCTACAAAATAATTTTCTTGTTCTTTTCTTGCGTTGAATTGAATTTTTCAGAATAATAGAGAAGCCTTTCTTGAAATGTAAGACACAAACCTGTAAACAGTAATAATGCAATATACGGTCCATAATCAACATTTCTAAGTCATGAAATAATATTCTTGAATAAGCCATTCGACCAAATTAGAAACTTTGTAATGTAGAAACAATGTACCCAACCCAAGCAACTCCTGCATCCCTCATTATAATAATTTACCAGTCACCAGAGAAATTTCCCAAGAAAGGCGGAGCACAAAACTGTTTAGAGTTGACGCTAGAACAGAAACAAAAGCAAAACTGCAGTAGGTAGTACAAAGAAATCAGTGAGGGATTGAAAATGTTAAGATATGGTCAAATTCAGAGTAAGTAATGGTAAAGAGTAAAAATAAGAAGATAGACCTAAAATTTAGGCATGGAGAGAAAGTGGGGTGGACCAAATAAAGCTATATAATGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAATGGGTAAAAACCAAGTGTGTATATGTGTATGTGTGTGTCGTACAAATTGGCGTGCAGTGTTTGATATCCCACCAAATGACCCAAAAGTTAGCGTTTGATATAAATGGTAAAGAGTGGAGACGTAGCAAAGTCTTCTGTTTAGGGGATGAGTGGAGTTGCAGAAACATAAAGACAGCCACAGCCAGCCTTGATGGAGAAAGAGAGAGAATCTGACACTACAGACATATGTGGGCCACCCTTCTCTTCACTTTAACCTCTTACAAAAACTCTCTCTCTCTGGGTTATTTTGTTTTTTGTTTTTGGCTAATCCTTTATTTTGAGGTAATTTGATGTTAGGGAGAGTTTTGAAGATCAAGTGCAGGAAAATTCAGCAGCCAAGTTGAATGTGTTGTCTTGTGTAGTGAGAGAACCAAGTTGTTTTTTTGTAGTTGGTTTTTGTCTCTAATCCTGCGCTTTCTTGCTGTCTTGCATATTTGAACACATTTATTAGGGAGTGGTTTAGGGTTTTCAGAAAGTGCCCAGAAAGGCAATTATTAGAAACAGGACCAAAGCTGCAGGCTATGGGAGATGACTAACATGACCTTGTCGGTTGTTCTGTTTGACTAAGCCATCACTTTTATTCTCCAAAAACTCACACCTGCGCCTTCCGATCTTGGCTTTGGGTGGCTGTTAGGAAACACAACAAACCCTTTTTTTTTCTTTTTTTGTTTTCCATCTTCTCCTAAACCCTTTCTTTCGTTATTTCCTTCTTTCTTTCCTATTGCTGCTTTTGCTGCTGCTACATCTTACTGCATATTTCTTCAATATTCCACTCTCACAATTAATCAAGTTCGTAGCACTTTCGGGAGTGATGAAGGATGCAAGAAAACACCAGAAATTAGTAAACGAATCTGGGAGTTTAATTAGCTATGCTACTAGTAGCTAATTAAGAAGATCATGATCAAAGGAGAGGTTAGGGTTGTTAATTTGTGGAAGATCCAAATGAATGTCCAAGGTAATGATGTGGTGATCAAGGTTTAGTTACTGGTAACCGAAAAGTAATAAAGCTAAGATTGATTACCTTTTGGGGTAGATCAGATATTATGGAGATGAGAGGTGAAGAGGAGGAAATAGGAACTCCTAAGTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACAGCCTAATTCTGATCGTCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCATCACACACTGAATCTTCATCATATACACAAACAACACACAAGAGACCAACATGAAGCAACCCCAGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTTACTCCACCGCCGATTGCCAGCGGTAGATTGATCTCAAGAACACCACCATTTCCAAGTGCAACGGACAACGGTATTCCTTCATCGGTAATTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGTGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCTTTGAAATGCGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGATGAAAGAAGAGGTGCCCTTGCAGCATGCTTTACCCAGCGGTTTCTTCATCTCCAACCCTGTCAGAAACAATGGCCATCGCACTGATAGGACACCAGTTGTTTCAGTGCCCCGTCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCTGGATGAATCTTCGAGTGAGGATCTGAACATGTATCACCCATCTAATAATGGAGCCCGGGACCTCTTCGGTCAGCAGACACAACTAATAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAAATTCAGAAACATGATGAACTGGAAGTGCAACAGTTCTGTGCTGAGGTGGGGGTAAGGAGACAAGTTTTCAAGGTTTGGATGCATAACAACAAACAAGCCATGAAGAAGAAACAAATGTAAGAATGTACTACAAGTTTTACCTTCAAACCCATTTCGTGAAAAATAATATATGTATCCATGATTGACTAAGTTCTAAGAACATAGATTTTATCCAGCAATTAGAGTAAGTCCTTAATTAGGCATTGAAAAGTGAGAAAGGTAATATTCGGTTCTTGAATGAACATCTCAATGTCATGTTACTTCCACTTCTAGAA 2945 39.63 MEMRGEEEEIGTPKSPLCYNNPSSNRESSTKQPNSDRPFLTTAADRRRDHTVPQLHFSHHHTLNLHHIHKQHTRDQHEATPDPPIQPSISASPPSAVTPPPIASGRLISRTPPFPSATDNGIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKEEVPLQHALPSGFFISNPVRNNGHRTDRTPVVSVPRHHQLPAVPISSMMMAFGGGSNGALDESSSEDLNMYHPSNNGARDLFGQQTQLIKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27021310 27024427 + XM_039026559.1 Bhi03g01303 30080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01303 334 Pfam ZF-HD protein dimerisation region 127 179 IPR006456 -
Bhi03g01303 334 Gene3D - 259 331 - -
Bhi03g01303 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 50 332 - -
Bhi03g01303 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 332 - -
Bhi03g01303 334 MobiDBLite consensus disorder prediction 66 97 - -
Bhi03g01303 334 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 270 327 IPR006455 -
Bhi03g01303 334 MobiDBLite consensus disorder prediction 16 39 - -
Bhi03g01303 334 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 128 179 IPR006456 -
Bhi03g01303 334 SUPERFAMILY Homeodomain-like 269 331 IPR009057 -
Bhi03g01303 334 MobiDBLite consensus disorder prediction 1 39 - -
Bhi03g01303 334 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 129 178 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01303 - - - csv:101220687 552.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01303 Bhi-Chr3:27021310 Bhi04g00174 Bhi-Chr4:4152079 1.45E-58 dispersed
Bhi03g01302 Bhi-Chr3:27021310 Bhi03g01303 Bhi-Chr3:27021310 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi04g00810 . 22 242 ZF-HD Transcription Factor Family AT4G24660 52.7 2.7e-52 203.0
Bhi11g00836 . 57 194 ZF-HD Transcription Factor Family AT4G24660 52.7 1.1e-42 171.0
Bhi06g00400 . 25 258 ZF-HD Transcription Factor Family AT5G39760 55.4 7.4e-51 198.7
Bhi11g03003 . 30 273 ZF-HD Transcription Factor Family AT5G39760 55.7 2.9e-47 186.8
Bhi03g01303 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi03g01302 . 128 334 ZF-HD Transcription Factor Family AT2G18350 53.8 6.4e-50 195.3
Bhi04g00810 . 53 246 ZF-HD Transcription Factor Family AT5G65410 51.5 2.3e-45 180.3
Bhi11g03003 . 12 298 ZF-HD Transcription Factor Family AT5G15210 50.5 2.5e-49 193.4
Bhi06g00400 . 1 252 ZF-HD Transcription Factor Family AT5G15210 51.2 3.3e-49 193.0
Bhi06g00400 . 17 254 ZF-HD Transcription Factor Family AT3G28920 59.3 3.4e-58 223.0
Bhi11g03003 . 22 283 ZF-HD Transcription Factor Family AT3G28920 60.7 9.9e-58 221.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
659 PF04770 ZF-HD_dimer 9.80E-31 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01303 Bhi_Chr03 FPKM 1.577779 1.987766 5.641057 5.009184 8.122439 8.094287 7.803355 6.230522 5.734705 6.70696