Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01304 ATGGCTGTCTCTAGATTATCCGCCTGCGTAGCTATGGCTGCGGCTGCTGCGTCCTTGCCCACGATCGCCAACCGCGCCTACGCCGACTCTCCATTTCGCTTCTCGCCTTTCTCTTCTTCTCAAGCTTCTCAGGAGGATAAGTCTTCTGATGACAAATCAGACGCTAAACCCGCTGTTGAGGAGCCGAGTAAGTCTGGATTTGATGCTGAAGCATTGGAGAGAGGTGCTAAAGCTCTCCGGGAGATCAATAGTTCTCCTAATGCTAAACAGGTTTTTGAGCTGATGAAAAAGCAGGAACAAGCGCGTCTTGCTGAGTTGGCCGCTGAAAAGGCCCATTACGAAGTCATTCAATCTCAAGCTGATATAGAGAGACAAAGGAAATTGGCTGAAGAACAAAGAAATCTTATCCAACAGCAAGCACAGGCAAAGGCACAGATACTGCGCTATGAAGATGAGTTGGCCAGAAAAAGAATGCAGACTGATCACGAAGCACAAAGGCGACATAATGTTGAGTTAGTTGGAATGCAAGAACAATCATCTATAAGAAAAGAACAAGCAAGACAAGTAACTGAGGAGCAGATACAGGCACAACAACGGCAGACCGAGAAAGAGAGAGCTGAAATTGAGCGGGAAACCATACGAGTGAAGGCTATGGCAGAGGCTGAGGGTCGTGCACATGAAGCAAAGCTGACTGAAGATCATAATCGCAGAATGCTGATGGAACGAATTAGTGGCGAGAAAGAAAAATGGCTCGCTGCAATTAACACGACATTTAGTCATATTGAAGGGGGTGTTAGGATTTTACTGACTGATCGCAATAAGTTGGTTTTGGCTGTTGGTGGAGCTACTGCGTTAGCTGCGGGAGTTTACACTACCAGGGAAGGTGCTAGAGTTATCTGGGGTTATGTTAATAGGTTATTGGGGCAGCCGTCACTCATTAGAGAATCCTCTGTTGCAAGATTTCCAGGTTCCAAGATAATACCCTGGGTAAAGAACAAAGCTGTTGCATTTTCTACAGGAGCTGGGGCTGCAGCCCTCGCTGAAAATAAAAATAATCTTGGGAATATTGTCCTCCATCCTTTACTAAAAAGGAGGATTGAACAACTTGCTAGAGCTACTGCAAACACCAAAGCTCATGAGGCACCCTTCCGTAATATGCTATTTTATGGACCTCCTGGGACCGGTAAAACTATGGTTGCAAAAGAGATTGCTCGAAAATCAGGTTTGGATTATGCCATGATGACTGGAGGAGATGTTGCACCTTTGGGCCCACAAGCTGTTACAAAAATACACCAAATATTTGACTGGGCTAAAAATTCAAGGAAAGGCTTACTGCTTTTCATCGACGAGGCAGATGCTTTTCTCTGCGAGCGCAATAGTACACGGATGAGTGAAGCTCAGCGAAGTGCTCTAAATGCATTGCTGTTCCGAACTGGTGATCAGTCAAGAGACATAGTTCTTGTACTTGCAACAAACAGACCAGGCGATCTCGACAGTGCCGTGACCGACCGAATGGATGAAGTAATTGAGTTCCCACTGCCTGGTGAGGAAGAGCGCTTCAAACTACTTAAGCTGTATCTAAACAAGTACCTAAGCAATCAAAATAAGGCCACATCCCAACAACTGTTTTCCTTCAAGAAAAGCCCCCAACAAATAATCATAAGAGACATAACTGATGACGTGCTCCAAGAAGCAGCCCAAAAAACTGAAGGATTCTCCGGTCGTGAGATTGCAAAGCTGATGGCCAGCGTTCAAGCAGCTGTCTATGGTCGGCCAGACTGTGTTTTGGACTCCACATTGTTAACAGAAATTGTTGATTATAAGGTAACGGAGCATCACCAAAGATTAAAGCTTGCTGCTGAAGGTGGTCACCCAGCTTAGCTGAGGAATTTGTTTTTTGTAATATCGCTTTGAGGGAAGAGATGTAGTTTTGTGTTGAGTCTTCATAGAGCCAACCTTTTACCTTATTTTTAACCCATTATTTTCCTTGCATACAAACTCTACAAAAATTCTGTAGTTGAAATATTCATTCACTTTACCCTCAGTTCATGGGTTAAAGACACAAAATTAGGAATCTGGGTCAATGGGCTTCCAGGCCCAAGGCCCATTGAAGTTTGATTCGATTTACAATTGTTCTTCGACAATAAAGATTCTTAATTTATCCATAGAATCATCGAAGCTA 2182 44.09 MAVSRLSACVAMAAAAASLPTIANRAYADSPFRFSPFSSSQASQEDKSSDDKSDAKPAVEEPSKSGFDAEALERGAKALREINSSPNAKQVFELMKKQEQARLAELAAEKAHYEVIQSQADIERQRKLAEEQRNLIQQQAQAKAQILRYEDELARKRMQTDHEAQRRHNVELVGMQEQSSIRKEQARQVTEEQIQAQQRQTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLMERISGEKEKWLAAINTTFSHIEGGVRILLTDRNKLVLAVGGATALAAGVYTTREGARVIWGYVNRLLGQPSLIRESSVARFPGSKIIPWVKNKAVAFSTGAGAAALAENKNNLGNIVLHPLLKRRIEQLARATANTKAHEAPFRNMLFYGPPGTGKTMVAKEIARKSGLDYAMMTGGDVAPLGPQAVTKIHQIFDWAKNSRKGLLLFIDEADAFLCERNSTRMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRMDEVIEFPLPGEEERFKLLKLYLNKYLSNQNKATSQQLFSFKKSPQQIIIRDITDDVLQEAAQKTEGFSGREIAKLMASVQAAVYGRPDCVLDSTLLTEIVDYKVTEHHQRLKLAAEGGHPA 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27028177 27032116 - XM_039027937.1 Bhi03g01304 30081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01304 626 Coils Coil 89 109 - -
Bhi03g01304 626 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 625 - -
Bhi03g01304 626 Gene3D - 332 578 IPR027417 -
Bhi03g01304 626 Pfam ATPase family associated with various cellular activities (AAA) 386 513 IPR003959 GO:0005524|GO:0016887
Bhi03g01304 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 607 IPR027417 -
Bhi03g01304 626 ProSitePatterns AAA-protein family signature. 485 504 IPR003960 GO:0005524|GO:0016887
Bhi03g01304 626 Coils Coil 119 159 - -
Bhi03g01304 626 SMART AAA_5 382 515 IPR003593 -
Bhi03g01304 626 Coils Coil 187 214 - -
Bhi03g01304 626 PANTHER PUTATIVE ATP-ASE 1 625 IPR039188 GO:0005739|GO:0007005
Bhi03g01304 626 MobiDBLite consensus disorder prediction 45 70 - -
Bhi03g01304 626 Pfam ATPase family AAA domain-containing protein 3, N-terminal 48 314 IPR021911 -
Bhi03g01304 626 CDD AAA 368 513 - -
Bhi03g01304 626 MobiDBLite consensus disorder prediction 34 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01304 K17681 ATAD3A_B; ATPase family AAA domain-containing protein 3A/B - csv:101221464 1072.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01304 Bhi-Chr3:27028177 Bhi10g01560 Bhi-Chr10:38523162 0 dispersed
Bhi03g01304 Bhi-Chr3:27028177 Bhi11g02083 Bhi-Chr11:59180361 2.57E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g982 . . Bda04g00046 . . . Bma09g00077 . . . Cma03g00742 Cma07g00483 Car03g00678 Car07g00425 Sed14g1124 Cpe19g00813 Cpe10g00618 Bhi03g01304 Tan03g1985 Cmetu08g0193 . Hepe04g1520 . . Cla01g01914 Cam01g2001 Cec04g1657 Cco04g1719 Clacu01g2021 Cmu01g1897 Cre04g1573 . . Cone6ag1626 Cone9ag1551 Lsi01g00670 . . Cme08g00853 Blo05g00798 . . . . Bpe06g00044 . . . Cmo03g00770 Cmo07g00481 . . . . . . . . . . . . . . . . . . . . . Csa06g03245 Chy02g00643 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007878 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01304 Bhi_Chr03 FPKM 70.812035 82.045654 122.122398 128.387146 68.200195 59.402382 66.996521 209.85643 225.022903 213.107559