Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01307 TAAAAAAAATCCCAAACGTGAGTAACACGTGTCCGAAAAGCAGTGTCATTTGAGGTCATAAATGAGATCGATCACGCCCTAGATTCGCTCCCAATTTGATTTTACGTCAATCTTCTTCTTCGTTCTTCCTCACTGTTGAATGTTGATTGAGAATTTATATTACCAATTTTTTTAATCCAAGAAAAATGTCCTCAACTGGATCAATCAATTGCTGAAGCCGAACAAAGCTGCGGTTTCTGGTGATTTTGCGCACCGCCCGTTGATTATGATTTACGCCGGTGGAATCGCCGTCTTCTACTTTAATCATTGTTTCAAACTCCCACTCCAGGAGTAGCGTTGAGTTTCTAATCCTGATTCACGGATGGTTTTCTTCACTGTGGTTGGATTTAAGATTGTTCTTTCTCCTTGGTGCCCTTGATCTGTACATTTTTTTTTTTTGTTTAATAGTCAGCAGGGAAGGATACGAAGTATCTGCTACCATATAGAGGATTGATATGCCACACGAATATGCCCTTCAAAAGCTTTTTTCGCGAGCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGAGGAGAAAGGAGGAACTGGCGAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCACCCTGAAGCAATTCAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATACGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGGAATATTACAAAGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTTACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACTTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTTTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTTTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACAATATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCTATCCCTGCATCTTGCATTCAACAAGGAGGAAATGCACCGACACCGACATCATTCTCGTCCTGTCTCAATGACCATCACCACCACCCACCCTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGCGTCACTGGGCCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTAGCTTCTGTAAAGAATTTCCAACTCGTGGCCAATGTCGATCCAGCCCTCGACGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAGCAAATACATCCAATTCTCAGTGATTCAGAAAGTAAGAGTTCAGGTTTGTTTCTTACAAAATTTCGCTTCTTTACTTTGAAGCCCTTTTAACTGGAAGGGTAAGCATTGCACGGCCATTCCACGGTCCAGGTTATATGGGACTGAACTCGATGTACGTGTCTCTGACGTCTGTTGATCTGAGATTGTTTTATATTTTCACCATCTCCTTGTTAATGGAAACTTCATTTCTTCTTCTATATCAATCTATTTTGTTCCA 2008 42.68 MPFKSFFRELREIKDGIRIKPKRGGERRNWRSRTRSHIAPDEVPPHPEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRNITKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYNIGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLNDHHHHPPLPASKGKEPDIDFSSTSVTGPPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVANVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27034614 27037925 - XM_039025633.1 Bhi03g01307 30084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01307 414 Pfam Tub family 116 409 IPR000007 -
Bhi03g01307 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Bhi03g01307 414 Gene3D Tubby Protein; Chain A 114 414 IPR025659 -
Bhi03g01307 414 MobiDBLite consensus disorder prediction 278 312 - -
Bhi03g01307 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Bhi03g01307 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Bhi03g01307 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Bhi03g01307 414 MobiDBLite consensus disorder prediction 23 47 - -
Bhi03g01307 414 Gene3D - 48 101 - -
Bhi03g01307 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bhi03g01307 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bhi03g01307 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bhi03g01307 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Bhi03g01307 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Bhi03g01307 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Bhi03g01307 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Bhi03g01307 414 SUPERFAMILY F-box domain 48 99 IPR036047 GO:0005515
Bhi03g01307 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Bhi03g01307 414 PANTHER TUBBY-RELATED 1 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01305 Bhi-Chr3:27034614 Bhi03g01307 Bhi-Chr3:27034614 0 dispersed
Bhi03g01307 Bhi-Chr3:27034614 Bhi03g01309 Bhi-Chr3:27034614 0 dispersed
Bhi03g01306 Bhi-Chr3:27034614 Bhi03g01307 Bhi-Chr3:27034614 0 tandem
Bhi03g01307 Bhi-Chr3:27034614 Bhi03g01308 Bhi-Chr3:27034614 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
662 PF01167 Tub 2.70E-103 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01307 K19600 - csv:101221704 799.275