Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01312 GAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGGAATATTACAAAGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTTACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACTTATCTTCTATACTCCGGATTGGTGCCTTGTAGCGGAGAATGAAGGTGATAAACTTTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTTTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACAATATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCTATCCCTGCATCTTGCATTCAACAAGGAGGAAATGCACCGACACCGACATCATTCTCGTCCTGTCTCAATGACCATCACCACCACCCACCCTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTCAGTTCCACAAGCGTCACTGGGCCACCAGTTCAAGAATTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTAGCTTCTGTAAAGAATTTCCAACTCGTGGCCAATGTCGATCCAGCCCTCGACGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAGCAAATACATCCAATTCTCAGTGATTCAGAAAGTAAGAGTTCAGGTTTGTTTCTTACAAAATTTCGCTTCTTTACTTTGAAGCCCTTTTAACTGGAAGGGTAAGCATTGCACGGCCATTCCACGGTCCAGGTTATATGGGACTGAACTCGATGTACGTGTCTCTGACGTCTGTTGATCTGAGATTGTTTTATATTTTCACCATCTCCTTGTTAATGGAAACTTCATTTCTTCTTCTATATCAATCTATTTTGTTCCA 1295 43.4 MLEGTEQLQLIFYTPDWCLVAENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYNIGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLNDHHHHPPLPASKGKEPDIDFSSTSVTGPPVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVANVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27034614 27036650 - XM_039025636.1 Bhi03g01312 30089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01312 287 PANTHER TUBBY-LIKE F-BOX PROTEIN 26 287 - -
Bhi03g01312 287 MobiDBLite consensus disorder prediction 151 185 - -
Bhi03g01312 287 ProSitePatterns Tub family signature 1. 215 228 IPR018066 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 43 59 IPR000007 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 59 83 IPR000007 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 108 135 IPR000007 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 197 214 IPR000007 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 215 231 IPR000007 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 244 263 IPR000007 -
Bhi03g01312 287 PRINTS Tubby superfamily signature 265 287 IPR000007 -
Bhi03g01312 287 Gene3D Tubby Protein; Chain A 6 287 IPR025659 -
Bhi03g01312 287 Pfam Tub family 19 282 IPR000007 -
Bhi03g01312 287 ProSitePatterns Tub family signature 2. 272 287 IPR018066 -
Bhi03g01312 287 SUPERFAMILY Tubby C-terminal domain-like 15 287 IPR025659 -
Bhi03g01312 287 PANTHER TUBBY-LIKE F-BOX PROTEIN 24 287 - -
Bhi03g01312 287 PANTHER TUBBY-RELATED 26 287 - -
Bhi03g01312 287 PANTHER TUBBY-RELATED 24 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01310 Bhi-Chr3:27034614 Bhi03g01312 Bhi-Chr3:27034614 0 dispersed
Bhi03g01312 Bhi-Chr3:27034614 Bhi01g02370 Bhi-Chr1:57752923 1.80E-134 dispersed
Bhi03g01311 Bhi-Chr3:27034614 Bhi03g01312 Bhi-Chr3:27034614 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
667 PF01167 Tub 2.20E-93 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01312 K19600 - csv:101221704 512.686