Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01315 TATTTAAAATAATTTCTCTAATTAAATTCAATTAATTAACTAAATTAATTTCAAATTAAATTTAACCATGGCGATGTCGTCGACGTTTTATCTATCTGCCGCCTGCACGTCCAACGTAACTGCCCGATCGATCATGGAGGAGTAACTGTCTTCCATGGATCAACGGCTACTTCTTCAATTTAATCAAATTTCAAATTCCCAATTCCATTTTTAAACCCACAAACCTCTCGATTTTTTTTAAAAAAATTCTACATTCAAATTTCTCCCTCTGCTCAAAACTCTGCCGGAGATCAAATTTCTTCTGAATTTCTGAACCAACCAATTCAAGACCCAAATCGGCGAAGATGAACGATTTGATGACGAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAGGCGCAGAGGGACGCCGCCGGCGACGGCTTCGACATTGAATCTGGCGGCCAAGAACTCAATCCGATGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACCCACAACGCCAAAATTCTCCGTGGATTAAGAGACAGAATCGACTCCGATATGGTCTCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATGTCCGTCGCGTACGGCGAAGGAACCGCGGTGGACCGGACAAGAACTTCAATCACGAAGGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGGGGTTGAGAGAAAAAGTTGTGGCAGATCACAAGGAGGATCTAAGAAGAAGGTATTTTGGTGCAAATGGGGAACAACCCAGTGAAGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGACATTGAGGGAGACTGAGTTAGGGGACCGAGTCAGGCACGAGTCAGTGATGGATATTCAGAGAAGTTTGAATAAGCTTCATCAGGTGTTTTTGGACATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATAGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTCTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGAATTTTTCTATTTTTTTTATTTTTTTAGCTTTCCTCAACTCATAAATTGAGAATTTTGTAATGGAAACCTTTTCTTTTTCTTCTTGTCCATTCCTATGTATCATTCCTATCTTTACCTGGAATTCAACTTTTTGTTGAG 1391 40.62 MNDLMTKSFLSYVELKKQAQRDAAGDGFDIESGGQELNPMEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRARILKEKLASLDQSNTANRLMSVAYGEGTAVDRTRTSITKGLRVKLREMMNEFQGLREKVVADHKEDLRRRYFGANGEQPSEEQVEKIMSGSLKLETFEGTLRETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLYYANQMKRKNKKWVYWVWAIIFLILLVCIVSMLVC 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27049194 27050658 - XM_039027477.1 Bhi03g01315 30092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01315 302 CDD SynN 48 195 IPR006011 GO:0016020
Bhi03g01315 302 PANTHER SYNTAXIN-112 3 298 - -
Bhi03g01315 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 270 IPR000727 -
Bhi03g01315 302 Gene3D - 41 172 - -
Bhi03g01315 302 SUPERFAMILY t-snare proteins 44 263 IPR010989 GO:0016020|GO:0016192
Bhi03g01315 302 Coils Coil 52 72 - -
Bhi03g01315 302 PANTHER SYNTAXIN 3 298 IPR045242 -
Bhi03g01315 302 SMART tSNARE_6 203 270 IPR000727 -
Bhi03g01315 302 Gene3D - 202 301 - -
Bhi03g01315 302 SMART SynN_4 40 167 IPR006011 GO:0016020
Bhi03g01315 302 CDD SNARE_syntaxin1-like 214 267 - -
Bhi03g01315 302 Pfam Syntaxin 48 243 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01315 Bhi-Chr3:27049194 Bhi03g02299 Bhi-Chr3:50565201 7.32E-74 dispersed
Bhi03g01314 Bhi-Chr3:27049194 Bhi03g01315 Bhi-Chr3:27049194 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01315 K08486 - csv:101217836 536.954