Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01386 TCTCTCTATTTATAAACCTCATATCCTTTCTTTCCTCTTCCTCTTATTCCCGTCTTTCAAACTCACCTAGGTCGACAACAACACTCACTGCTCTCAGCCACACCTTCTTCTTTGGAGGTTGGCTTCTTCTTCTTCCTCATTCATTCGGTTTAAGTTTTTGAAAAAAAATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCTGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACGCAAATCATGTTTGAGACATTCAACGTGCCTGCTATGTACGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGACGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCTATCTATGAGGGTTATGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTTACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATTGGTATGGAAGCTGCAGGAATTCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGATCTTTACGGAAACATTGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTTGTTGCACCACCTGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATACGACGAATCCGGCCCATCCATTGTCCACAGGAAGTGCTTCTAAGCTCTCAATTTCTTTGATGATGATGAAGAAGATGATGATGATGGTGAGTTATTTCCCTTTAGTTGGCTTTTTTGTGTCATGTAATGTTGAACTGAGATTGGTTGGAGTCAAAGGAAGAAAGGGGGGTCTATTGAATTGAAGGGACTGTGTTACATTATGTTGTATCAATGCCATTTGATTCTCCATTCATACTGATGGCCTGTTGGAAGCTCACAATTGCTGTGGTGACCCTCCAGATTTGGGGCAAAGAGGAATTCTGTTCTGTTCTGTTCTGTCATCTCTATGGTTCAACCATTTCATTTTAGTAGGGATATTTGTAGCAGAAGAGTGATTGGTGATGCTTTTCCTAAAATATATATTTTTTCTTCTTTCAATTTTCCTCTTTTTTTTTGAAGGTTTTTTCTCTGAGAACATTAATGTTAATATTTATTTTATGCGAAATATTAGTGTCAGTTTCCCGGTCATAAACTTGGTATGGAATTTAAATCTTAATACTCTGGCTTTTGAGCTTTTCA 1816 43.28 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28900854 28903883 + XM_039025747.1 Bhi03g01386 30163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01386 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bhi03g01386 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Bhi03g01386 377 Gene3D - 10 371 - -
Bhi03g01386 377 PRINTS Actin signature 28 37 IPR004000 -
Bhi03g01386 377 PRINTS Actin signature 51 62 IPR004000 -
Bhi03g01386 377 PRINTS Actin signature 63 85 IPR004000 -
Bhi03g01386 377 PRINTS Actin signature 117 130 IPR004000 -
Bhi03g01386 377 PRINTS Actin signature 142 161 IPR004000 -
Bhi03g01386 377 PRINTS Actin signature 238 254 IPR004000 -
Bhi03g01386 377 Gene3D - 140 340 - -
Bhi03g01386 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bhi03g01386 377 PANTHER ACTIN 1 376 IPR004000 -
Bhi03g01386 377 SMART actin_3 7 377 IPR004000 -
Bhi03g01386 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bhi03g01386 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bhi03g01386 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bhi03g01386 377 PANTHER ACTIN 1 376 - -
Bhi03g01386 377 Pfam Actin 5 377 IPR004000 -
Bhi03g01386 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01386 K10355 ACTF; actin, other eukaryote - csv:101215469 758.059
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi03g01386 Bhi10g02339 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01386 Bhi-Chr3:28900854 Bhi10g02339 Bhi-Chr10:61009448 0 dispersed
Bhi06g00964 Bhi-Chr6:26411118 Bhi03g01386 Bhi-Chr3:28900854 2.60E-18 dispersed
Bhi06g00965 Bhi-Chr6:26411118 Bhi03g01386 Bhi-Chr3:28900854 2.65E-06 dispersed
Bhi07g01840 Bhi-Chr7:50097381 Bhi03g01386 Bhi-Chr3:28900854 3.45E-72 dispersed
Bhi11g00485 Bhi-Chr11:11625053 Bhi03g01386 Bhi-Chr3:28900854 1.62E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.4e-214 741.5
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 735.7
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.9e-212 735.7
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 9.4e-212 733.4
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 3.4e-214 741.5
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G59370 97.3 4.5e-214 741.1
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G59370 93.6 3.9e-210 728.0
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.5e-214 742.7
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.3e-213 739.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 6.5e-213 737.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G46520 93.9 1.8e-210 729.2
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 742.7
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.5e-214 741.1
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.9e-213 738.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 1.2e-211 733.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 4.3e-209 724.5
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.2e-208 720.3
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.4e-207 718.8
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-207 717.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.5e-209 726.1
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.8e-208 721.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 8.2e-208 720.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-207 719.2
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.5e-214 741.1
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.9e-213 738.4
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 5.5e-212 734.2
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 1.2e-57 219.9
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 8.7e-56 213.8
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 74.0 2.5e-55 212.2
Bhi01g03373 CCT,ECH 1 129 Cytoskeleton Gene Families AT2G19760 74.4 2.8e-54 208.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.4e-53 205.7
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.5e-57 218.4
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 7.4e-55 210.7
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 7.4e-55 210.7
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 72.5 1.8e-53 206.1
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29350 72.0 2.2e-51 199.1
Bhi06g01687 . 1 87 Cytoskeleton Gene Families AT5G56600 77.0 3.4e-37 151.8
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.2e-65 244.2
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 1.1e-58 223.4
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 1.1e-53 206.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29340 72.4 9.2e-53 203.8
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.7e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01386 Bhi_Chr03 FPKM 4.180914 3.935314 56.341221 58.128708 346.304535 338.51181 333.660858 85.584419 83.924065 86.150932