Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01496 TTCCCCCTCAATGCTTTGCTGCACTTAACCGCAGCCAACCCAAGCAGCGAAAAAAACAGAGGAACTTATTGGGAGCAGGTGCAGTTCTTCCTCTCCGCCGCCGCCGCCGCCGCCCCTCTTTTATCTTTTCCAGCTCCGATCGCTTGCCTTCCTGCCACTCCAATGGAAGCTCTTCTTCTCAACGCACCCACTTCACACCCAATTGCTCGAAGATCTCTCCTTCTATCCTCACCTTCCTTCTTGAATGGAGGAGCGTCCATTTCGCTTGATGACAATCGAAGCAGAATTAGACTTACCAGGCCTCCATTCATCCAAGCCACGCTTTCAAAACACACCGTTGACATCCCTCCTAATTCTGTAACCAACACTTCGGTTCCGACTCTTGGAGACGCATTGGCAGCCACCCCTTTGCCTCCTCGCAAGAGGGTGTCGGCGGATTCGCTGCAGTTCCCGCCTGGATATCTCGGCGCTGTTCCGGACCGTTCCGGTTCTGATGATGATGGCGAGGATAGTCTTAATGCGATGGAGTATTTGACCAGAATCTTGGGTTCGAAGGTGTATGATGTGGCTATTGAATCCCCGTTGCAGCTTGCGCCGACGTTGTCTGAACGTTTGGGGGTGAATATCTGGCTCAAGAGGGAGGACTTGCAGCCCGTGTTCTCATTCAAGCTTCGTGGAGCTTATAATATGATGGCAAAACTTCCGAAAGAACAGTTGGACAAAGGAGTTATATGCTCTTCAGCTGGAAATCATGCTCAAGGAGTTGCATTAGCGGCTAAGCGATTAAGATGTAATGCTGTAATTGCTATGCCCCTTACTACACCTCAAATTAAGTGGCAATCAGTTAAAAAATTGGGTGCAACTGTTGTTCTTGTTGGAGATTCATACGATGAGGCACAAGCATATGCTAAAAAGCGGGGCGTAGAGGAAGGCCGCACATTCATTCCTCCTTTTGATCATCCTGATGTTATAGCAGGGCAGGGTACAGTTGGGATGGAAATTGTGCGTCAAATAAAAGGCCCATTGCATGCAATTTTTGTGCCAGTTGGGGGTGGTGGTCTAATAGCTGGTATTGCTGCTTATGTCAAGAGGGTTTCTCCTGAGGTAAAGATTATTGGGGTAGAGCCATCTGATGCAAATGCTATGGCATTATCATTATGTCATGGCGAAAGAATAATATTGGACAAGGCTGGAGGTTTTGCTGATGGTGTAGCAGTTAAAGAAGTTGGTGAAGAGACTTTTCGCCTTTGCAAAGATCTCATGGATGGTGTAGTTCTTGTTAGCCGTGATGCTATATGTGCTTCGATAAAGGATATGTTTGAGGAGAAGAGGAGCATCTTGGAACCTGCAGGTGCTCTTTCTCTTGCTGGAGCCGAGGCATACTGCAAATATTATGACTTGAAGGGAGAAAATGTTGTGGTAATAACCAGCGGTGCAAATATGAACTTTGACAAACTGAGTATAGTTACTGAACTTGCCAATGTTGGTCGTGAAAAAGAGGCTGTGCTCGCAACTATATTGCCGGAGATACCTGGAAGCTTTAAAAGATTTTGTGAACTGGTTGGGCCTATGAACATTACAGAATTCAAGTATAGATATAGTTCTGAAAAAGAAGCGGTTGTTCTTTACAGTGTTGGTATCCATATGCCTTCCGAACTAGAAGAAATGAAGAATAGGATGGAATCGGCTCAGCTTGAAACTTATAATCTCACAAAGAATGATCTTGTAAAGGATCACTTGCGTTACTTGATGGGAGGCAAATCAAATGTTGAAAACGAAGTTCTTTGTCGTTTTATTTTCCCGGAAAGGCCAGGTGCTCTAGAGAAGTTCTTAGATGCTTTGAGTCCACGCTGGAACATTACTTTGTTTCATTATCAAAGCAAGGGTGAAACTGGTGCAAACATATTAGTTGGGCTTCAGATTGAAAAATCCGACATGAGCGAATTCCATGAACGTGTTCGGAGGGTCGGATATGATTACGTTGTGGTAACTGATGATGGTATCTTTCAGCTTTTGATGCATCATAGACCATCTCACAAGGCCGCAAATCTCTTAAGTTGATCCAAATATCGACATATTGATGACTAAACGAAAGCGGGTAAAACAAGCTACTCCAAATCTTGTACATTGTATTAGAGACGTGGCATTCTGTACTTCAAAAGGCTACCAAGTATCATCCTTTACCATGAAATTTTGTTATGTGTTTGATTAACTTAGTGTTGTCTCTACTTTTACACGATTAGGGGTGGGGGATCATTTCAGATACTCTCTTCTTTGTGTTGATGTTGGAATAGCTCTGTTTTATTTGTCCAATTCAAAATAATGGATGATGATGGAAATTAGTAGAGTCAAGAGTGGAGTCTACTGGTAAAGTCATAAGTCTGTATTGGGGAAATTGACCAACTATCCTTGTCTGAATGAAATGATGCAAGTAGTACTAAAACTAGATTTTACTGCTTA 2460 43.66 MEALLLNAPTSHPIARRSLLLSSPSFLNGGASISLDDNRSRIRLTRPPFIQATLSKHTVDIPPNSVTNTSVPTLGDALAATPLPPRKRVSADSLQFPPGYLGAVPDRSGSDDDGEDSLNAMEYLTRILGSKVYDVAIESPLQLAPTLSERLGVNIWLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALAAKRLRCNAVIAMPLTTPQIKWQSVKKLGATVVLVGDSYDEAQAYAKKRGVEEGRTFIPPFDHPDVIAGQGTVGMEIVRQIKGPLHAIFVPVGGGGLIAGIAAYVKRVSPEVKIIGVEPSDANAMALSLCHGERIILDKAGGFADGVAVKEVGEETFRLCKDLMDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYDLKGENVVVITSGANMNFDKLSIVTELANVGREKEAVLATILPEIPGSFKRFCELVGPMNITEFKYRYSSEKEAVVLYSVGIHMPSELEEMKNRMESAQLETYNLTKNDLVKDHLRYLMGGKSNVENEVLCRFIFPERPGALEKFLDALSPRWNITLFHYQSKGETGANILVGLQIEKSDMSEFHERVRRVGYDYVVVTDDGIFQLLMHHRPSHKAANLLS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31911659 31917615 - XM_039025688.1 Bhi03g01496 30273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01496 632 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 122 618 IPR005787 GO:0004794|GO:0009097
Bhi03g01496 632 Pfam Pyridoxal-phosphate dependent enzyme 135 424 IPR001926 -
Bhi03g01496 632 Gene3D - 172 263 IPR036052 -
Bhi03g01496 632 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 160 173 IPR000634 GO:0006520|GO:0030170
Bhi03g01496 632 Gene3D Biosynthetic Threonine Deaminase; Domain 3 446 620 IPR038110 -
Bhi03g01496 632 PANTHER THREONINE DEHYDRATASE 83 619 - -
Bhi03g01496 632 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 122 474 IPR036052 -
Bhi03g01496 632 CDD ACT_ThrD-I_2 539 619 - -
Bhi03g01496 632 CDD Thr-dehyd 124 428 - -
Bhi03g01496 632 ProSiteProfiles ACT-like domain profile. 447 518 IPR001721 -
Bhi03g01496 632 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 83 619 - -
Bhi03g01496 632 Pfam C-terminal regulatory domain of Threonine dehydratase 531 617 IPR001721 -
Bhi03g01496 632 Pfam C-terminal regulatory domain of Threonine dehydratase 437 526 IPR001721 -
Bhi03g01496 632 SUPERFAMILY ACT-like 527 619 IPR045865 -
Bhi03g01496 632 CDD ACT_ThrD-I_1 446 529 - -
Bhi03g01496 632 Coils Coil 499 519 - -
Bhi03g01496 632 Gene3D - 140 418 IPR036052 -
Bhi03g01496 632 ProSiteProfiles ACT-like domain profile. 540 611 IPR001721 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01496 K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase [EC:4.3.1.19] - csv:101205909 1130.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01496 Bhi-Chr3:31911659 Bhi03g01498 Bhi-Chr3:32074427 1.35E-29 dispersed
Bhi03g01496 Bhi-Chr3:31911659 Bhi03g01497 Bhi-Chr3:31912331 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1078 . . Bda01g00374 . . Bpe03g01260 . Bma10g00066 . . . Cma07g00883 Car03g01073 Car07g00872 Sed14g0355 Cpe10g00253 . Bhi03g01496 Tan03g1148 Cmetu08g1792 . Hepe04g0990 . . Cla04g00945 Cam04g0985 Cec04g1108 Cco04g1167 Clacu04g1013 Cmu04g1000 Cre04g1055 Cone3ag0217 . Cone13ag1227 Cone19ag1213 Lsi01g01273 Csa06g02638 Chy08g00896 . Blo07g01369 . . Bda05g01197 . Bpe02g00739 . . . Cmo03g01186 Cmo07g00915 . . . . . Cpe19g00442 . . . . . . . . . . . . . . . . . Cme08g01247
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001322 3 3 2 2 2 3 1 3 4 3 2 3 2 2 3 2 3 2 1 2 3 1 2 3 2 4 1 5 4 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g01496 Bhi_Chr03 FPKM 4.947544 5.290267 6.226166 6.543904 12.902004 14.879348 12.80363 13.620562 12.576303 11.174146