Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01538 AAAATTTCCAAGGCGGGAAGCGAATCTGATAAAATTTTCCACTTTCCACCGAACTCTGAATTGGCGCCTCAAGAAAGAAAACGCCATTGTCGGCCGAGCAGCGAAGCTTTCCGTTACAGAATCGGGAATTGATAGCTGAGAAGGCGGCTAGGGCTTGAAGGAACGAACAGATTATTCTGCGTTGTCTTCACGTTTTGAGTCGTCAATGCCGGATTCTATCCCTCGCGACACTGACATCATGCATGTTCATTACGAGGTTGAAGATGACGACAATGGAGGAGACGAAGAAGAGGATGATGAGGAGACTGACGACGGTGAGGAAACAGTGGAAGAGCATGCGGGAGAAGAAATTGATTATGTTACTGAGATTGTGCAATCTCCTAGGGCTTCACAAACAGGGCCTTCTGAATCTGCTCAAGCTAGGGTTTCGTTTTGGGTTGAGGAAGAGGTAGACAAGCGTAGAAGGACCGAGGGAGGCGAAGCGACTTCTTCACAGAATGAGTGCAATAACGACTTCACTTGCTCTATTTGCATGGAGCCGTGGACCAATTACGGTGACCACCATATCTGTTGTCTTCCTTGTGGGCATCTGTATGGCATGTATTGTATCAATAGATGGCTGCGACAACATAAAAATGCAGGGAAGTGTCCACAGTGCAATAGGAAGTGTTCCACAAAGGATGTCAGGAAACTTTTTGCACCACGAATTGCGGCTGCTGATGGAGAATCTCAAAAGAGAATCCAGTCACTTGAGGCTACTTGTGCCTCTCTTGAGAAGAAGGATGCTGATTGGTCTAAAAAAGAAGTTGAATGGAAAAAGAGAGAAACAGATTTGCAGTTGAAAGTTCGTGAACTCACTGAGAGGACAAATTATTTGGAGCATTTATTAGAAGATTCACAGCGAAAACCTGTGCTAGCCAATCTTGATTGCACCTTTCACGGGAAATCTGTATCTGAGCATAACTTTGGCTTAAGGTTTAGCGGCCAGGTTGCCTCTTGCAGTTTCATCTTAAAGAAAGAGCTTCTGGTGGATGGTGCTCGTTTAATCGATGTAGATGCCTCTAACCAAGTTGTTTTGGTTGCAAGAAGGCAGTCTGGTTTTGGTGGTACGCATGTACTGACTAAGATAAGCTTAATGTCTCCATATGAAAGGGAAGATATAAGAATTCCTTTTTGTACTAATGCTGTAAGGGACTTGCATATTTCTCCGGCTGGTAGAAACCTTGTGCTTTTTTCTTCATTGGGAAAGAAATTAGCTATTCTCAGTATGGAAAGCAACCATATCATCCTCGACTATGATTTACCGGATGCTGCTTGGTCGTGTTCATGGGATCAGAATAGTTCACACTATATTTATGCTGGATTAAAGAATGGTTCGCTCGTGATGTTTGATATGCGACAAACTGTGGGTCCCCTGAAAACCTTACAAGGCCTGACAAACAATCCAATCCATACAATACATTCTCTTTCAAGTTACTCAACTCTTTCTAATGATGTTAAATCTGTTCTGTCTGCTTCTGCATATGGTGTATGTCAATGGAATTTTGATGCAGTAGGAGAAGGGCCATTTTTGGTTCCCGAAACAAATCAAGGAGTTTGTACATCTCTTGCCTATTGCTTGGGTAGAGACGAAATTGTTGCTTCGTACCGTCCCAAAGTTGGAATGTCAAATGAGATAGTTTATTCTCAGCCTTCACCTTCTCCTTCTCACACTGCTGGGCATGGAGTTGTGGGCTGCCATGTGGCATTCAAGAAAGAAGACAATCTCCAACAATTTTCAAAGTTGGGTTCAGCATATGCCTATGTAGATGCAATACGTTTGCCGAAATCTACCATCATAGACCTCCAAGACTGCAATAGCTTGTTTGTATCCGCAGATGCTGTAATGGGTGACTTGATCTTGCAGGAACTGCCTTCTTTTAGGTCCATTCAGCATCTTAAAGTACATAAGCATCCTGTTCGTGATGTGAAGTATTCGTGTGGCCTCGATCGAGGATTGCTTAGTTGTTTAAGTGATGATACCCTTCACCTTTTTTGCACCAAAGGCTTATGAACAAGTTTATATATTTAGTTGGGGCATGTGACTAATATCAGAGGCAGACAATTTTAGGCGTTGAAGACCAGGATTTATTTTCATCTTTTGGGCATCCACATCGCTTCCTTAATCGAAATTCATCGATCCAATGTGATTAAATTGACTAGACATTTAAATGGATCGTTGTATTAAATAATTTTAAGCCAACTATTGATTTTCTA 2256 42.33 MPDSIPRDTDIMHVHYEVEDDDNGGDEEEDDEETDDGEETVEEHAGEEIDYVTEIVQSPRASQTGPSESAQARVSFWVEEEVDKRRRTEGGEATSSQNECNNDFTCSICMEPWTNYGDHHICCLPCGHLYGMYCINRWLRQHKNAGKCPQCNRKCSTKDVRKLFAPRIAAADGESQKRIQSLEATCASLEKKDADWSKKEVEWKKRETDLQLKVRELTERTNYLEHLLEDSQRKPVLANLDCTFHGKSVSEHNFGLRFSGQVASCSFILKKELLVDGARLIDVDASNQVVLVARRQSGFGGTHVLTKISLMSPYEREDIRIPFCTNAVRDLHISPAGRNLVLFSSLGKKLAILSMESNHIILDYDLPDAAWSCSWDQNSSHYIYAGLKNGSLVMFDMRQTVGPLKTLQGLTNNPIHTIHSLSSYSTLSNDVKSVLSASAYGVCQWNFDAVGEGPFLVPETNQGVCTSLAYCLGRDEIVASYRPKVGMSNEIVYSQPSPSPSHTAGHGVVGCHVAFKKEDNLQQFSKLGSAYAYVDAIRLPKSTIIDLQDCNSLFVSADAVMGDLILQELPSFRSIQHLKVHKHPVRDVKYSCGLDRGLLSCLSDDTLHLFCTKGL 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32976438 32990155 - XM_039026201.1 Bhi03g01538 30315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01538 615 MobiDBLite consensus disorder prediction 21 45 - -
Bhi03g01538 615 MobiDBLite consensus disorder prediction 1 20 - -
Bhi03g01538 615 SUPERFAMILY RING/U-box 98 158 - -
Bhi03g01538 615 SUPERFAMILY WD40 repeat-like 317 609 IPR036322 GO:0005515
Bhi03g01538 615 MobiDBLite consensus disorder prediction 1 48 - -
Bhi03g01538 615 SMART ring_2 106 151 IPR001841 -
Bhi03g01538 615 Pfam Ring finger domain 105 152 IPR001841 -
Bhi03g01538 615 PANTHER RFWD3 PROTEIN 20 610 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Bhi03g01538 615 Gene3D - 169 490 IPR015943 GO:0005515
Bhi03g01538 615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 165 IPR013083 -
Bhi03g01538 615 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 20 610 - -
Bhi03g01538 615 CDD mRING-C3HGC3_RFWD3 105 152 - -
Bhi03g01538 615 ProSiteProfiles Zinc finger RING-type profile. 106 152 IPR001841 -
Bhi03g01538 615 SMART WD40_4 357 396 IPR001680 GO:0005515
Bhi03g01538 615 SMART WD40_4 571 611 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi03g01538 Bhi11g02016 CCT
Bhi03g01538 Bhi11g02016 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01538 Bhi-Chr3:32976438 Bhi11g02526 Bhi-Chr11:68270915 3.38E-06 dispersed
Bhi03g01537 Bhi-Chr3:32976438 Bhi03g01538 Bhi-Chr3:32976438 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01538 K15691 - csv:101202775 1044.65