Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01624 CTTGATCTCAACGCAAAGTAGAAGACAGTGACCTTTTTCCAGAGAGGAGAAAGGTGTGAAACCCCTCCACCATAGCTCATATTCCTCTCTCACCTTAACAAATTCTGATAGAGAAGCTTCGATCCATAGCTGTAAATTGATTGTTTCGGTTTCCCCATTCCAATCCAATCCAAACGCCTTCTGTTAATGGGTAACGGCCATGGCCACCGCAAGCATTTCAACCATGACGTAAATTCCTCTCCATCCACTACAAACGCTCATTTCCCCTCCAATAAATACTCCCCATCTCAACCCACTTTTCGAAATTCCTCCTCCACGACGAAGATGGAGTCCTTGCCCTACGCCCACGTTGATTCCAGCCTTCGAGCCCTTGCAGCTCAGGCTGAGGGCTTTGGCCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTCACCAATTTGGCAGATGATGGTCCGGGATCACTTAGGTTCGGATGTCGTAAGAAGGAGCCCCTTTGGATTATCTTTGAAGTTTCGGGCACAATTCACTTGTCTTCGTATCTGAGTGTGTCGTCGTATAAGACTATAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTTAAGGAATGTGAGCATGTGATTATTTGCAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCTAATTCAAAGCACATATGGATAGACCGTTGCAGCCTCCGAGACTATGATGACGGGTTGATTGATATCACCCGAGGAAGCACAGATATCACTATTTCTAGGTGTCACTTCTCACACCACGACAAGACAATGCTCATCGGAGCAGATCCCTCTCACATTGGTGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGATGGTACACGTCAACGCCATCCACGTGTTAGATATGCTCAAGTGCATCTATACAATAATTACACCAGAAACTGGGGGATCTATGCTGTCTGTGCTAGTGTGGAATCACAGATATACTCTCAGTGCAACATATATGAAGCGGGAGAGAAAAAAGTGGCATTTAAATATCTAACTGAAAAGGCAACAGACAAGGAAGAGCCTTCAAGTGGTTGCATATGGTCTGATGGAGATTTATTTGTAAATGGCACTCAAAGTGGGCTGTTGGCTGCAACGGCTGGACACAACTTTTTTCATCCTTCAAAGCATTACTCTTCTTGGACAGTGGAACCTCCAACAGATTCTCTTAAACAGATTCTCCAACATTGTACTGGATGTCAAAACATGCCAAGACCCACTGATCTGCCCTTGGTACCTTAAAAGATTATATAACTTGTTGAGATTGTAGTTTTGGGCCCTGAACTTTTATCCACTTTTCATTTTTGGTCCTTGAAGTATAGTTTGACTTTGGCCCTTTGAAGTTTTAACATCTCAACTTTAGTCCTTTCTTAACTTCTTTGTCAAATCCACTTTTAAGTCCCTATGTAAAACCATTGTGTTTAATTTTAGTATTGGTGTGATATCAAAGCGTAACCTTATATATTGTATATAACGATATATACAATATTTAATTTTACTATTGGTGTGACTACACAATAAATCCTTTCTTCACTTCTCTACTA 1622 41.99 MGNGHGHRKHFNHDVNSSPSTTNAHFPSNKYSPSQPTFRNSSSTTKMESLPYAHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLADDGPGSLRFGCRKKEPLWIIFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCHFSHHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGEKKVAFKYLTEKATDKEEPSSGCIWSDGDLFVNGTQSGLLAATAGHNFFHPSKHYSSWTVEPPTDSLKQILQHCTGCQNMPRPTDLPLVP 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34322094 34325487 - XM_039028024.1 Bhi03g01624 30401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01624 377 PANTHER PECTATE LYASE 18-RELATED 44 370 IPR045032 GO:0030570
Bhi03g01624 377 Gene3D - 51 361 IPR012334 -
Bhi03g01624 377 MobiDBLite consensus disorder prediction 15 45 - -
Bhi03g01624 377 SMART amb_all 77 290 IPR002022 -
Bhi03g01624 377 ProSiteProfiles Zinc finger integrase-type profile. 324 365 IPR003308 GO:0008270
Bhi03g01624 377 Pfam Pectate lyase 121 283 IPR002022 -
Bhi03g01624 377 PANTHER PECTATE LYASE 44 370 - -
Bhi03g01624 377 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Bhi03g01624 377 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Bhi03g01624 377 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Bhi03g01624 377 MobiDBLite consensus disorder prediction 1 45 - -
Bhi03g01624 377 SUPERFAMILY Pectin lyase-like 65 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01624 Bhi-Chr3:34322094 Bhi07g00768 Bhi-Chr7:28247294 1.23E-50 dispersed
Bhi03g01624 Bhi-Chr3:34322094 Bhi07g00767 Bhi-Chr7:28247064 1.23E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01624 K01728 - csv:101219724 716.457