Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01719 ATATGTACCCTCTTTATTTTTATATATTATAATATTTCCCCAACTTGGTGCAACTCCATGTTCATTAGTCCGTTTTCCACTTTCTTCAGACCAAAAGAAGGAAGAAAAAGAGGAAGAAGAAGAAGACAATGGAGCTCAGTCAACATGGTTTCTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGGTTCAATGATTTCTTCCAAAATGGCTGGAATTTCAATTCTTTTGATGAAAATCCCCAAATGGGTACCTCTATTTTCCCTAATTTTCCCAGTATTCAACCAGCTAATGATTTTTCTTTCGCCGACCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATCAGTAATAAGAACAGTGGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGTTTCATAGAGAGTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGAGCAACTTGGTGTGCGTGAAACTAATGTTTCTAAAATGGGTGTGGCTGAATTGGGGAAAAGAAACAGCAACAAAGCTAAGAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGACTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTAAAAGAAGAAGAGGAAATTGGTTTGGATTCAAATCATGTGGGATTCTTCAATGGGATTTCCAAGGAACGGAAGTCTAATGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGATGTTGAAAGGAAGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGATTATTGCTGTCAACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGCAGGGAAGTGCTCAGAAAGCTCTGGCAAGTTCTGATGTTATAAAGGAAGCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAGAGGAAAGACTTTAAATCCGGAGCTCTCAGCTTGAGGAAGATTGAAGTGAAGAACATTAATGGCGTTCTTCATATGGATGAATGAGAGAATCTGTTACAATTAGAAATAATTGATCCGGAAGTCTCTTTCCAATAATTAATCTAGGTTTTATGTGCTGCATTTAGTGATTAGACTTGGATATACCGAAAATGACAGTCCAATAATGTACTGAACGAGATCAACAAAAGAGTTCCATTTTTCATGATAACTCTCTTTTCTTAGT 1422 39.59 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFNSFDENPQMGTSIFPNFPSIQPANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETPPFVSQEEISNKNSGGYPPAAMEEEELGFIESETAPSVCKVEMEQLGVRETNVSKMGVAELGKRNSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKERKSNEVQVRNSPKFDVERKERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEQGSAQKALASSDVIKEALFRNAGYGGKCL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36244371 36246091 + XM_039026641.1 Bhi03g01719 30496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01719 343 CDD ACT_UUR-ACR-like 268 309 - -
Bhi03g01719 343 Pfam Helix-loop-helix DNA-binding domain 173 216 IPR011598 GO:0046983
Bhi03g01719 343 Gene3D - 158 230 IPR036638 GO:0046983
Bhi03g01719 343 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 343 - -
Bhi03g01719 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 229 IPR036638 GO:0046983
Bhi03g01719 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Bhi03g01719 343 SMART finulus 173 222 IPR011598 GO:0046983
Bhi03g01719 343 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01719 Bhi-Chr3:36244371 Bhi09g02536 Bhi-Chr9:68801824 2.60E-85 dispersed
Bhi03g01719 Bhi-Chr3:36244371 Bhi03g01720 Bhi-Chr3:36244375 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
716 PF00010 HLH 2.10E-09 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01719 - - csv:101205974 622.468