Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01787 TTCCCTCCACATCCATCTAAACAAATTTCCCTCCTCCCATCTAAAAAAGGCTACCAAAATGCTATTCCCTTAATCTCCACTTTGATCTCACAACCCTATTCCTCTTCTTCTTCCTCATCTTCTCAACTTTCATCCCATTTCCTTCTTCCATCATCTCCTCATAATTTCCTGTAAATTTCAATATTTTTCCATTCCTCCTGGCCTTTGGATCCTCCATGCGCGGCGGCTCTCGAGCTCCGAACCGGTCGGAGCCACTGCCTCAGTCCCAAACTGCCCAGATCCTGCCGCCTCTCAACCGCCACCTTGCTTTTGACTCCGCTAAGCCGCCGTTTGTTCCTCCGGGTCATTATTACCACTTCGGTGACGGTTCTTCCAATGTTATTGATCAACAACCTGATTCCATCGTTGTTAAACCTCTCAAACCAAAGCAGAAGGGTGCCATGTATAACAACATGGTTGAATTGAATGACTATATTCATGATCAGGGATCTTCAAAAGATGCCCTCAGTTCTGTTCAGACACCCATGTCTGTAAAAGGAGGAAGGGTGTACAATAAGTCAAAGACTTCAAGGAAAACTACATCTGGGCCTCAAACACCTATCTCAGACACTAGCACTTATTCTCCCCTTACTCCTGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTGATTAAGCAAGCAAGGGATGGCATTCTTGACTTGAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATCATATATTGGAAAGGATTTAGTCAACAAATTCCAGGAAATGTGGATAGTGATACTTCAATGTTACAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAGATGATAAGATAAGAGCAATGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATATCCAAAAGTGGCTCTTCGTGACAGAAGAAGACATTAAAAACTTGCCTTGCTTTCAGAATGAAACACTGATAGCAATTAAAGCTCCTCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATTGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGATGAATGTGGTCCAGCCACCTAGTAGCTTCCTACATGCTTCCAGTTCTGGATCAAATGAACATCTAACAACAGAAGCAATCATTGGGGAGAGTAGTAGAAATGAAATTGAACCTCAAGCTCATCTATCCCAACACAGCAGCAGCTGTGATGTTAATGGTTCAAATGAGTTTCCTGGTGGAATGATGAAGATTATTCCTTCAGATGTTGATAATGATGCGGATTACTGGTTGTTATCGGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTATATTGCATGGGATCAATCAGATATGGTTCCTCATGACTTTTTAATATCTGATGTCAGTGCCCAAAGGCCAAGACCAGGAAGTCCACATTCAGAGACAGCTGAAGCACCGTCTGATGTTAACTTAAGACAGAGGTGACAAAGGAACAGATCTCACCTTAATTCATCAGTGATCTGTTCCCATCCTCATTAATCCACAAGATGTTGATTTGTAGCCAAACAATCAGTTGAATTTGACTAGAACTCGCGCTCAACTGTACAGTGTAATTTTATGGCCCAAGTAATATATCGGGAAAATTTTCCAAGCATGGTATACAATACAATTTTCAGAGCTAGTCGGGCGGCAAGTTTAGAGGAAATAGAAACAAACTTTTGTAAGGTTGCAGATGGGCGGAAGCATGTAAGATAGGTTTCCAGACATTAACAGGCCGGCAAGAACTTCAATGCATCGAAGTCCGAGGATTGGCCGTCATCTACTTCCGCCGTCTCCGAATCGACGCGGCTGATTCCGACGATGAACTGCGGTGCGGCTCTCGGAGAATCGTTTGTCTGATCGGCGGATCGGGCGGAAAACGACGGCAATTTGTTCGGTGGCGGTGGTGACGTTATCGGCGGTTGCTGTTGCTGATCGTTTCTCTGTAATTAAAGTGAGAATAATTAGAGAAAATGTGAAGAATTAGTCATGGGAATGGCGCTATAATAAATTGCCATTAATGGCGATGATACTGAAATGAGTGAAGGCTTTCAATCACGATGAATCCTAATTGTGTTCAATTTGAACGCTTAGAATTTATTAAAATTTTTTAAAAAAAAGGTTAAATCGTAATTCGCAAATTAGGGCACAA 2337 41.59 MRGGSRAPNRSEPLPQSQTAQILPPLNRHLAFDSAKPPFVPPGHYYHFGDGSSNVIDQQPDSIVVKPLKPKQKGAMYNNMVELNDYIHDQGSSKDALSSVQTPMSVKGGRVYNKSKTSRKTTSGPQTPISDTSTYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFSQQIPGNVDSDTSMLQVDVENLSFEERRLDDKIRAMQERLRNLSEDENIQKWLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNVVQPPSSFLHASSSGSNEHLTTEAIIGESSRNEIEPQAHLSQHSSSCDVNGSNEFPGGMMKIIPSDVDNDADYWLLSDAEVSITDMWRTDYIAWDQSDMVPHDFLISDVSAQRPRPGSPHSETAEAPSDVNLRQR 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37668908 37681683 + XM_039027372.1 Bhi03g01787 30564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01787 471 Pfam E2F transcription factor CC-MB domain 226 326 IPR032198 GO:0046983
Bhi03g01787 471 Gene3D - 217 327 - -
Bhi03g01787 471 Gene3D - 139 212 IPR036388 -
Bhi03g01787 471 SUPERFAMILY E2F-DP heterodimerization region 224 327 IPR037241 -
Bhi03g01787 471 MobiDBLite consensus disorder prediction 95 140 - -
Bhi03g01787 471 SUPERFAMILY Winged helix DNA-binding domain 145 208 IPR036390 -
Bhi03g01787 471 Coils Coil 230 257 - -
Bhi03g01787 471 SMART E2F_TDP_2 145 210 IPR003316 GO:0005667|GO:0006355
Bhi03g01787 471 PANTHER TRANSCRIPTION FACTOR E2FB 24 459 - -
Bhi03g01787 471 MobiDBLite consensus disorder prediction 446 471 - -
Bhi03g01787 471 Pfam E2F/DP family winged-helix DNA-binding domain 147 210 IPR003316 GO:0005667|GO:0006355
Bhi03g01787 471 PANTHER TRANSCRIPTION FACTOR E2F 24 459 IPR015633 GO:0000978|GO:0006357
Bhi03g01787 471 CDD E2F_DD 226 327 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01787 K06620 E2F3; transcription factor E2F3 - csv:101212480 765.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01787 Bhi-Chr3:37668908 Bhi10g00182 Bhi-Chr10:3975320 8.21E-176 dispersed
Bhi03g01786 Bhi-Chr3:37668908 Bhi03g01787 Bhi-Chr3:37668908 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
729 PF16421 E2F_CC-MB 3.90E-33 No_clan Bhi TF