Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g01959 AAAATAAAGGAAAATAGAGGAAAGCCCTTGAATCCTTCATTTCTCCATTCTTCTTCTTCCTCCGGTTCTACTCTCTTCTACGGCTTTCCTTAATTTGTAGCTCCTGAATTTCACAGATTCCGTCTTCCACCAGCCCACAACCATTCTCTTCCTCCCTCCGAAGGCTTCTCCTTTTCACAGTTTCTGATATCCTTCCTCTCACAGTGATTATAGCTGCTGATAATTAGAGGGGTTTAATTAGAAATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACTCATCTTGGTCTACTAATAGTGACACTACCAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTACATCATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAAGAGGAGAAGTTGGTTCCCCTTTATGGTAGGGGTAAAATACCATCCGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAGTCGTCCTGCTGGTCAAAGACCTCAAACAGCACCACCCCCTGTTCCCAATGACTTTCCAAATTATGGATTTGGATTCACTGGTGGCTTCATGCCAATGGCAACTGCAAGGATTGGTAACTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCTTCTTTGTTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTCTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACCTTCCATGGGGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTCCTTTTACTTGTTGGTGTGTTTGTAATTCTTGCTTTGCTCTGGTGGTGAAGATAATCTTTCATTTCAATGGAAATAGCCACAAGTGTAGAGATTTCATTTTTAGTGCTTATGAGGTAGGTTAGTTGATGCTGTGATCATATATATGTATGCTTGATAATACTTACTGTGAGGTTCCTATCAATTCATGTTATTGATGTCCCAAAGGACTTCTGGTTGTTGCTTTCTTTTGCACAGACCAGTTCACAATCCTGCTTCTGGAAACTTCTTTACCCCAACAGTAATAAAGTGAAATTATTTTGCTATTTTGTTCAA 1194 40.37 MANEFGESTSVPHQNSSWSTNSDTTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPPPVPNDFPNYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41436736 41438202 - XM_039025179.1 Bhi03g01959 30736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g01959 228 MobiDBLite consensus disorder prediction 94 121 - -
Bhi03g01959 228 MobiDBLite consensus disorder prediction 1 24 - -
Bhi03g01959 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Bhi03g01959 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Bhi03g01959 228 CDD RING-HC_AtRMA_like 32 76 - -
Bhi03g01959 228 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Bhi03g01959 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Bhi03g01959 228 SMART ring_2 34 74 IPR001841 -
Bhi03g01959 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bhi03g01959 228 SUPERFAMILY RING/U-box 30 87 - -
Bhi03g01959 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01959 Bhi-Chr3:41436736 Bhi05g01871 Bhi-Chr5:58791094 1.25E-29 dispersed
Bhi04g01991 Bhi-Chr4:51580420 Bhi03g01959 Bhi-Chr3:41436736 9.77E-06 dispersed
Bhi04g01992 Bhi-Chr4:51580420 Bhi03g01959 Bhi-Chr3:41436736 9.77E-06 dispersed
Bhi09g03086 Bhi-Chr9:79642604 Bhi03g01959 Bhi-Chr3:41436736 2.32E-10 transposed
Bhi03g01959 Bhi-Chr3:41436736 Bhi04g00282 Bhi-Chr4:6667926 8.03E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g01959 K10666 - csv:101205026 446.432