Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02000 CCTTCTTCTTCCCTCCCATTTTCCATTCCCTTCAACCCTAAACCCTCTCCTTTCTCTCTCCTCTTCCTTCATGGCTTCTCTTTCTCTCCTCTGCTCCATTGCCTTCGTCTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCCAGAATCCCCGGTGTCTACTCCGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCTGCTCTCAGTACTGCGCTCTTCAACAATGGCTTAAGCTGTGGTGCTTGCTTCGAGATCAAGTGCGCTAATGACCCAAAATGGTGCCATCCTGGTAGCCCTTCTATTTTCATTACGGCTACCAATTTTTGTCCCCCCAATTTTGCTCTTCCTAATGACAATGGCGGTTGGTGTAACCCTCCTCGCACTCATTTCGATCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCCGGAATCGTTCCCGTCTCTTACCGCCGGGTGCCATGTAGGAAACAAGGAGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTATTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTTAGCGTAAAAGGATCAAACACCGGTTGGATGAGCATGAGCCGTAACTGGGGCCAAAATTGGCAATCCAACTCTGTTTTAGTGGGCCAGGCTCTCTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATGGAACGTGGCACCTTCTAATTGGCAGTTCGGTCAGACCTTCACGGGAAAGAATTTCCGCGTTTGAAATTCCCTCCCTTTTTCCTTTTATCCTTTTTTTTGAAAATTTTCCCTCTCTCTATTTTTCCCCTCTTTATTTACCCGGGAAACTTTGGTGTAGTGGGGAGAGGTAAAAGTTAAAGTAGGACGGTCAAAATGGGACTTTCTAGGGTTAAGAAGTCAACAGCAATTATAAGTCTGTAATTCCGAATCATAGGTGTAGGAAAAGTTACCGAGGTGTGGTAACTTCTTACTTTTTTTGTTTTGGTTTGTTTGTTGGGTGTGTGCTTTTATGTTAAAGTAGCGGTGGTGAATTTGAAAATTACCGCGGTTGAAAAGAGTGTAGGGGAGGCTGAAGTGGCTGCAATGGTAAATGTGTAGCCCGCAGCAATTTACTGCTACATATAGTAAAGTTTGTTATGTTATATGAAATGACTCACATGTATTATTATT 1281 47.46 MASLSLLCSIAFVSFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPKWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42858229 42860161 - XM_039024939.1 Bhi03g02000 30777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02000 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Bhi03g02000 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Bhi03g02000 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Bhi03g02000 261 PANTHER EXPANSIN 8 260 - -
Bhi03g02000 261 PANTHER EXPANSIN-A15 8 260 IPR002963 GO:0009664
Bhi03g02000 261 Gene3D - 167 259 IPR036749 -
Bhi03g02000 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Bhi03g02000 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Bhi03g02000 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Bhi03g02000 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Bhi03g02000 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Bhi03g02000 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Bhi03g02000 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Bhi03g02000 261 Gene3D - 23 163 IPR036908 -
Bhi03g02000 261 SMART dpbb_1 70 157 IPR007112 -
Bhi03g02000 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Bhi03g02000 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Bhi03g02000 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Bhi03g02000 261 Pfam Lytic transglycolase 70 157 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02134 Bhi-Chr1:49923685 Bhi03g02000 Bhi-Chr3:42858229 1.24E-98 dispersed
Bhi03g02000 Bhi-Chr3:42858229 Bhi08g00598 Bhi-Chr8:19742027 1.80E-169 dispersed
Bhi12g00340 Bhi-Chr12:10448928 Bhi03g02000 Bhi-Chr3:42858229 5.06E-94 dispersed
Bhi03g02000 Bhi-Chr3:42858229 Bhi10g00718 Bhi-Chr10:15399062 4.15E-174 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02000 - - csv:101212872 518.85