Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02042 TTTTTTATTTGAAATGTAGCGCAGAATCTCAGTATGCATCTCCCCTAAGATCGCGCGGAATCGAATAATCATTATTCATTATCATTACTTCCACCAATGGCTTCGTGCCGCATAAATCTTCCTCACCGGTGTTCTCCCGGAACGCCGCGCCTTGGTCCTACTTCTTCCCTCCAAAACCCTAATCCTCTTCCTCAGTTACTTCCTCCATTTCCATTTTCTCGTCTCAATTCCAGTAAGTTATCCTCTTCCAGAATCCGCCACCGAAGTATTGTTGCCATGAACCCTCCCATGGCGAAGGAGGCGAAGCCTGTTTCAGAGGATAGAATGCTCTCGATGGATTTACAGGTGTATGTTCCGCCTCATCCATTGATCAAGCACTGGGTTTCCGTTTTGAGGAATGAACAAACTCCTTGCCCCATTTTTAAAAATGCAATGGCAGAGCTTGGGAGGCTACTTATTTATGAAGCTTCAAGGGATTGGTTGCCTACTGTAACGGGAGAGATACAGTCACCCATGGGTGTTGCTTCAGTTGAGTTTGTCGATCCGAGAGAGCCTGTGGCTATAATTCCTATCCTCAGAGCTGGTCTAGCTCTTGCAGAATACGCATCATCTGTGCTGCCTGCAACAAAATTGTACCATCTTGGAATAAGCAGGGACGAGGAGACTCTTCAACCAACTGTATATCTTAACAAGTTACCAGAAAATTTTCCTGAAGGTTGTAGAATCTTTGTGGTCGATCCCATGCTTGCAACCGGTGGCACAATAGTGGCAGCTCTTGATCTCTTGAAGGAACGTGGAATTGGCAACAAGCAAATTAAAGTGATATCTGCTGTTGCTGCCCCTCCTGCCCTTCAAAAGCTCAGCGAGAAGTTTCCAGGGCTACATGTATACACCGGAATTATTGACCAGACTGTTAATGAAAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGATCGGAGCTTCGGCACATAAAATTTGTTTCATCGAGCTTCAGTAATTTGCATCTCTAATTTTTACTTGGTAATGATCAAGTTGATTATTTGGCGATTGTAAGATTGCGTCCAAGGATTGATAATTTTTGAAAGTTACGTCAATGGAAGGCAGTATAGTAGAATTAGGCAAAAGCTGTGTTCTCTGGATTGTATATGTACTTCAATTCTTCGCCTTTATCTTAACCTACAATAAAAGATGAGTTAAATTAACAAGTTTAAA 1218 42.86 MASCRINLPHRCSPGTPRLGPTSSLQNPNPLPQLLPPFPFSRLNSSKLSSSRIRHRSIVAMNPPMAKEAKPVSEDRMLSMDLQVYVPPHPLIKHWVSVLRNEQTPCPIFKNAMAELGRLLIYEASRDWLPTVTGEIQSPMGVASVEFVDPREPVAIIPILRAGLALAEYASSVLPATKLYHLGISRDEETLQPTVYLNKLPENFPEGCRIFVVDPMLATGGTIVAALDLLKERGIGNKQIKVISAVAAPPALQKLSEKFPGLHVYTGIIDQTVNEKGFIIPGLGDAGDRSFGT 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43998677 44002854 + XM_039024945.1 Bhi03g02042 30819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02042 293 CDD PRTases_typeI 149 269 IPR000836 -
Bhi03g02042 293 TIGRFAM upp: uracil phosphoribosyltransferase 84 293 IPR005765 GO:0004845|GO:0006223
Bhi03g02042 293 MobiDBLite consensus disorder prediction 1 31 - -
Bhi03g02042 293 Gene3D - 74 293 IPR029057 -
Bhi03g02042 293 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 35 289 - -
Bhi03g02042 293 PANTHER URIDINE KINASE 35 289 - -
Bhi03g02042 293 SUPERFAMILY PRTase-like 84 292 IPR029057 -
Bhi03g02042 293 Pfam Uracil phosphoribosyltransferase 86 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02042 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - csv:101209447 497.278
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02042 Bhi-Chr3:43998677 Bhi03g02044 Bhi-Chr3:43998772 1.76E-172 dispersed
Bhi03g02042 Bhi-Chr3:43998677 Bhi03g02043 Bhi-Chr3:43998678 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi10g01929 . 68 557 PRT Gene Family AT2G16570 84.8 5.8e-242 834.3
Bhi10g01929 . 64 557 PRT Gene Family AT4G34740 84.4 5.2e-243 837.8
Bhi10g01929 . 28 530 PRT Gene Family AT4G38880 70.8 8.9e-200 694.1
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi11g00216 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi11g00215 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi12g00418 . 6 104 PRT Gene Family AT4G22570 82.8 8.0e-44 173.7
Bhi12g00417 . 6 107 PRT Gene Family AT4G22570 80.4 3.4e-42 168.3
Bhi04g00409 . 80 172 PRT Gene Family AT4G22570 81.7 9.2e-40 160.2
Bhi04g00941 . 11 100 PRT Gene Family AT4G22570 78.9 3.3e-37 151.8
Bhi11g00216 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi11g00215 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi12g00418 . 1 96 PRT Gene Family AT4G12440 84.4 1.3e-40 162.9
Bhi12g00417 . 1 99 PRT Gene Family AT4G12440 81.8 5.4e-39 157.5
Bhi04g00409 . 76 171 PRT Gene Family AT4G12440 79.2 7.9e-38 153.7
Bhi04g00941 . 4 99 PRT Gene Family AT4G12440 78.1 5.1e-37 151.0
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g01588 . 1 186 PRT Gene Family AT1G71750 64.5 6.1e-69 258.1
Bhi09g01823 . 23 475 PRT Gene Family AT1G55810 85.5 4.0e-225 778.1
Bhi01g01902 . 19 482 PRT Gene Family AT1G55810 73.5 1.7e-199 693.0
Bhi09g01823 . 72 488 PRT Gene Family AT3G27440 74.9 1.6e-183 639.8
Bhi01g01902 . 80 482 PRT Gene Family AT3G27440 75.4 1.8e-179 626.3
Bhi01g01902 . 1 482 PRT Gene Family AT3G27190 86.1 3.9e-247 851.3
Bhi09g01823 . 11 474 PRT Gene Family AT3G27190 73.9 2.6e-206 715.7
Bhi03g02043 . 3 288 PRT Gene Family AT3G53900 67.7 6.4e-107 384.8
Bhi03g02042 . 3 293 PRT Gene Family AT3G53900 66.6 4.6e-105 378.6
Bhi03g02045 . 6 228 PRT Gene Family AT3G53900 77.6 1.3e-102 370.5
Bhi03g02044 . 6 233 PRT Gene Family AT3G53900 75.9 9.0e-101 364.4
Bhi09g01823 . 8 475 PRT Gene Family AT4G26510 83.9 1.9e-230 795.8
Bhi01g01902 . 11 482 PRT Gene Family AT4G26510 75.2 1.1e-209 726.9
Bhi01g01902 . 1 482 PRT Gene Family AT5G40870 86.7 2.3e-247 852.0
Bhi09g01823 . 10 477 PRT Gene Family AT5G40870 73.0 1.7e-205 713.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39