Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02276 ACCTATATTTTTACAACTTCACAACAACTCTTTCTCTCATCTCTCCAACCATTTTCTTCCTTTCTCTCTCGACCGTCATGGCAGAATTAGATCAAGAAGTAATTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCAAATCATGAAAGACCCCGTCACGATCGCCTCCGGCATAACCTACGATCGTGAAAACATCGAGAAATGGTTGTTTTCTGACAAACATAAGACATGTCCTGTCTCGAAGGTCGTTTTGTTAGACTTCGATATCACTCCCAACCATACTTTAAGACGAGTCATTCAAGCTTGGTGCACCGCCAATGCTACAAGCGGTGTTGAGAGGATACCGACGCCGAAGCCCCCAGTCGACCGAAAGCAAGTCGTTCGGATTCTCGCTGATGCTAAGTTATCTCCATTCTCTCAACAGAATTGTCTTCGTCGTCTTCGATCTATTGCTGCGGCGAATGAAACTAATAAACGTTGCATGGAAGCTGCTGGAGTTGTGGAGTTCTTGGCTGGGCTTGTTTGTAGTTCTACAACCAACGTGGAGTCTGGCTTGGAAGATTACGCGTTTGACGACATGTCGGCAAATTTAGGGGATGAAGCTTTGAGCATTCTTTACAAACTCCAAATCTCCGAATCCTCTCTGAAATTTCTCCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTACAAAATCGAAGCTACTCCTCTCGAGCATATTCAATAATGCTTCTCAATTCAATGTTCGAAGTTGCAGATCAGATTCAAATCCTCAATCTCACCACCGATTTCTTCATCGAAATCGTCCAAATACTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCGTTGAAATTGCTAATCGGTGTCTGTTCGAGTATCAGAAACAGAGTAAAGGCGGTTGAAGCCGGCGCGGTTCCGGTTCTGGTCGATCTCCTCCTCGATCTTGATTCATCGGAGAAGCGATTGAACGAGATGATTCTTGTGGTGCTTGATCTGCTCTGTGGCTGCGCTGATGGCAGAGCGGGGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTCTGAGAGTTTCGTCGCTTGGAAGTGAGAAGGCGGTTGGGATATTGTGCTCCGTTGCGAGATTCTCGGCGAGCCAAAGCGTTCTCCAGGAAATGGTGCGGCTCGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTCGGCGCCGGAGTGAAAGCGAAAGAGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGACATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCAGCTTATCCACAACATTAGGTTTTTCTTTCTTTTTTTTTTCTTTGCCACAAAACTTTATTTCTTTTAAGTGCATATAATAGTAGAGTTGATTGAAATTGGATTGTATACTTCAAAAGTTTGTACATATTCTTTGTGTAAATAATTGGTTGATAATTAAAGTA 1495 44.68 MAELDQEVIDPPPFFLCPISLQIMKDPVTIASGITYDRENIEKWLFSDKHKTCPVSKVVLLDFDITPNHTLRRVIQAWCTANATSGVERIPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMEAAGVVEFLAGLVCSSTTNVESGLEDYAFDDMSANLGDEALSILYKLQISESSLKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADQIQILNLTTDFFIEIVQILKDQISKQASKSALKLLIGVCSSIRNRVKAVEAGAVPVLVDLLLDLDSSEKRLNEMILVVLDLLCGCADGRAGLLNHAAGIAVVSKKILRVSSLGSEKAVGILCSVARFSASQSVLQEMVRLGVVTKLCFLLQVVGAGVKAKEKAKEILKLHGRTWRNSSCLPSSLRSAYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 50123179 50125670 + XM_039026844.1 Bhi03g02276 31053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02276 424 Pfam U-box domain 12 82 IPR003613 GO:0004842|GO:0016567
Bhi03g02276 424 CDD RING-Ubox_PUB 15 57 IPR045210 -
Bhi03g02276 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842|GO:0016567
Bhi03g02276 424 Gene3D - 99 409 IPR011989 -
Bhi03g02276 424 SUPERFAMILY ARM repeat 103 384 IPR016024 -
Bhi03g02276 424 SMART Ubox_2 14 78 IPR003613 GO:0004842|GO:0016567
Bhi03g02276 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 8 422 - -
Bhi03g02276 424 SUPERFAMILY RING/U-box 3 85 - -
Bhi03g02276 424 PANTHER WDSAM1 PROTEIN 8 422 IPR045185 GO:0061630
Bhi03g02276 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02276 Bhi-Chr3:50123179 Bhi11g02374 Bhi-Chr11:64661842 8.19E-149 dispersed
Bhi03g02276 Bhi-Chr3:50123179 Bhi01g00112 Bhi-Chr1:2316857 6.23E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02276 - - cmo:103485961 700.279