Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02299 CCCAAATCTCACAACCCCTGAGAAAATCACTCACAAAAACTTCCTTTTTCTCTCTCAAACTCAACAAAATCTGAAACTTTCCTTCTTTTTTTTTTTCTTTTTTTTTCCAAATTTCTTCCCAATTAAAAAGGGAAAAAAAATGAACGACTTGATGACCAAATCGTTCACCAGCTATGTGGATCTGAAGAAGGCAGCCATGAAGGATCTCGACCTTGAATCCGGTTTAGAAATGCCATCGTCCATCACCAACGACAACGGCGACATGGGTCTCTTTCTGGAAGAGGCTGAGAAGGTGAAAACGGAAATGGGTTCAATTAGAGAGATTTTAGTTAAACTCCAACAAGCTAACGAAGAGACCAAATCTGCTCACAAACCCGAAATCCTCAAATCGCTTCGTAATACGATCAATGCCGACATCATCACCGTCCTGAAAAAGGCCCGATCGATCCGATCCCAGCTCGAGGAAATGGACCGCGCAAATGCTGCCAAGAAACGTCTCTCCGGCAGCAAAGAGGGCACTGCAATTTACCGGACGAGAATTGCGGTGACGAACGGGCTGAGGAAGAAGCTAAAGGAATTGATGATGGAGTTTCAGAGTTTGAGGCAGAGGATGATGACGGAGTACAAGGAAACGGTGGGGAGACGGTACTTCACGGTGACCGGGGAGCATCCGGAGGAGGAAGTGATCGAGAAGATAATATCAAATGGTGGGGAGGAGTTTTTGGGGAAGGCGATAAAGGAGCACGGGCGGGGGAAGGTGGCGGAGACAGTGGTGGAGATACAGGACCGGCACGGGGCGGCGAAGGAGATAGAGAAGAGCTTGTTAGAGCTACACCAAGTGTTTTTGGATATGGCAGTGATGGTTGAAGCACAAGGGGAAAAAATGGATGATATTGAACATCATGTGATGAATGCTTCACAATATGTTAGGGATGGGACTAAGGATTTGAAGACAGCAAAAGATTTGCAAAGGAATAGTAGAAAGTATATGTGTGTTGGGATTTTGCTTTTGCTTCTCATTATTTTGGTTGTTGTTATTCCTATTGCTGTTAGTTTTGGAAGTTCTTGAAATCTTATGGTGTTTTTTTAATAGGATTTTATGAGATGGGGATGTGTTCTTGGCATCCCCAATTATAATATGTGTGTGTGTATTAAGAGAATGTGGGGAATTGTAATGCAAATTCTATTCATTTCTTTTTCA 1201 43.38 MNDLMTKSFTSYVDLKKAAMKDLDLESGLEMPSSITNDNGDMGLFLEEAEKVKTEMGSIREILVKLQQANEETKSAHKPEILKSLRNTINADIITVLKKARSIRSQLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEHPEEEVIEKIISNGGEEFLGKAIKEHGRGKVAETVVEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVMNASQYVRDGTKDLKTAKDLQRNSRKYMCVGILLLLLIILVVVIPIAVSFGSS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 50565201 50566479 + XM_039025507.1 Bhi03g02299 31076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02299 309 Gene3D - 42 169 - -
Bhi03g02299 309 SMART tSNARE_6 206 273 IPR000727 -
Bhi03g02299 309 CDD SNARE_syntaxin1-like 210 272 - -
Bhi03g02299 309 Pfam Syntaxin 45 246 IPR006011 GO:0016020
Bhi03g02299 309 SMART SynN_4 37 163 IPR006011 GO:0016020
Bhi03g02299 309 ProSitePatterns Syntaxin / epimorphin family signature. 217 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bhi03g02299 309 SUPERFAMILY t-snare proteins 41 266 IPR010989 GO:0016020|GO:0016192
Bhi03g02299 309 Gene3D - 206 307 - -
Bhi03g02299 309 CDD SynN 42 198 IPR006011 GO:0016020
Bhi03g02299 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Bhi03g02299 309 PANTHER SYNTAXIN 4 302 IPR045242 -
Bhi03g02299 309 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 302 - -
Bhi03g02299 309 Pfam SNARE domain 248 299 IPR000727 -
Bhi03g02299 309 Coils Coil 137 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02299 K08486 STX1B_2_3; syntaxin 1B/2/3 - csv:101220775 547.354
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi03g02299 Bhi11g01551 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01314 Bhi-Chr3:27049194 Bhi03g02299 Bhi-Chr3:50565201 7.32E-74 dispersed
Bhi03g01315 Bhi-Chr3:27049194 Bhi03g02299 Bhi-Chr3:50565201 7.32E-74 dispersed
Bhi03g02299 Bhi-Chr3:50565201 Bhi08g01910 Bhi-Chr8:54935454 2.98E-93 dispersed
Bhi03g02299 Bhi-Chr3:50565201 Bhi03g01774 Bhi-Chr3:37337842 4.12E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g156 . . . . . . . . . . Cma03g00248 . Car03g00212 . Sed14g0695 Cpe10g01038 Cpe08g00962 Bhi03g02299 Tan03g0640 Cmetu08g0109 . Hepe04g0635 . . . . . . . . . Cone3ag0557 Cone10ag0552 Cone13ag0475 . Lsi01g01659 Csa04g01137 . Cme04g01796 . . . . . . . . . Cmo03g00262 Cmo07g01220 . . . . . . Bhi11g01551 . . . . . . . . . . . . . . . . Cme08g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g01047 . 8 338 SNARE and Associated Proteins AT3G24350 63.9 7.1e-100 361.7
Bhi03g02299 CCT 1 309 SNARE and Associated Proteins AT1G08560 67.8 1.6e-100 363.6
Bhi03g01314 . 1 300 SNARE and Associated Proteins AT2G18260 56.4 5.8e-87 318.5
Bhi03g01315 . 1 300 SNARE and Associated Proteins AT2G18260 56.4 5.8e-87 318.5
Bhi11g02367 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 8.9e-115 411.0
Bhi03g01775 . 24 283 SNARE and Associated Proteins AT3G11820 72.3 3.5e-103 372.5
Bhi03g01774 . 24 283 SNARE and Associated Proteins AT3G11820 72.3 3.5e-103 372.5
Bhi08g01910 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 4.8e-92 335.5
Bhi11g01551 CCT 31 285 SNARE and Associated Proteins AT3G11820 52.9 4.8e-68 255.8
Bhi11g02367 . 1 279 SNARE and Associated Proteins AT3G52400 63.6 2.0e-91 333.6
Bhi03g01775 . 1 283 SNARE and Associated Proteins AT3G52400 60.8 5.5e-86 315.5
Bhi03g01774 . 1 283 SNARE and Associated Proteins AT3G52400 60.8 5.5e-86 315.5
Bhi08g01910 . 1 281 SNARE and Associated Proteins AT3G52400 56.7 1.8e-81 300.4
Bhi08g01910 . 1 299 SNARE and Associated Proteins AT4G03330 69.2 1.6e-108 390.2
Bhi11g02367 . 1 279 SNARE and Associated Proteins AT4G03330 58.2 1.1e-82 304.3
Bhi03g01775 . 1 290 SNARE and Associated Proteins AT4G03330 53.8 4.9e-78 288.9
Bhi03g01774 . 1 290 SNARE and Associated Proteins AT4G03330 53.8 4.9e-78 288.9
Bhi11g01551 CCT 1 285 SNARE and Associated Proteins AT4G03330 51.6 1.4e-69 260.8
Bhi08g01910 . 1 303 SNARE and Associated Proteins AT1G61290 78.9 4.0e-128 455.3
Bhi11g02367 . 1 279 SNARE and Associated Proteins AT1G61290 62.8 3.3e-90 329.3
Bhi03g01775 . 1 283 SNARE and Associated Proteins AT1G61290 56.9 9.6e-82 301.2
Bhi03g01774 . 1 283 SNARE and Associated Proteins AT1G61290 56.9 9.6e-82 301.2
Bhi08g01910 . 1 303 SNARE and Associated Proteins AT1G11250 77.2 1.2e-124 443.7
Bhi11g02367 . 1 279 SNARE and Associated Proteins AT1G11250 62.7 1.2e-92 337.4
Bhi03g01775 . 1 292 SNARE and Associated Proteins AT1G11250 56.8 8.2e-86 314.7
Bhi03g01774 . 1 292 SNARE and Associated Proteins AT1G11250 56.8 8.2e-86 314.7
Bhi11g01551 CCT 1 308 SNARE and Associated Proteins AT3G03800 73.1 1.6e-113 406.8
Bhi10g01452 . 1 305 SNARE and Associated Proteins AT3G03800 54.8 1.3e-83 307.4
Bhi10g01451 . 1 270 SNARE and Associated Proteins AT3G03800 57.8 7.4e-82 301.6
Bhi11g01551 CCT 1 203 SNARE and Associated Proteins AT5G08080 77.9 3.6e-78 288.9
Bhi10g01452 . 1 204 SNARE and Associated Proteins AT5G08080 58.8 2.1e-54 209.9
Bhi10g01451 . 2 169 SNARE and Associated Proteins AT5G08080 62.5 2.4e-50 196.4
Bhi11g00014 . 1 256 SNARE and Associated Proteins AT5G16830 59.2 4.7e-75 278.9
Bhi11g00014 . 1 256 SNARE and Associated Proteins AT5G46860 66.0 4.6e-80 295.4
Bhi11g00014 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 3.1e-73 272.7
Bhi11g00014 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 5.2e-52 202.6
Bhi07g00570 . 1 336 SNARE and Associated Proteins AT5G05760 65.3 3.2e-110 396.0
Bhi04g01047 . 8 338 SNARE and Associated Proteins AT3G24350 63.9 7.1e-100 361.7
Bhi06g01461 . 1 327 SNARE and Associated Proteins AT5G26980 75.2 5.7e-125 444.9
Bhi09g00937 . 1 318 SNARE and Associated Proteins AT5G26980 66.5 8.0e-103 371.3
Bhi09g00938 . 1 317 SNARE and Associated Proteins AT5G26980 66.5 2.0e-101 366.7
Bhi09g00937 . 1 318 SNARE and Associated Proteins AT4G02195 67.1 5.9e-106 381.7
Bhi09g00938 . 1 317 SNARE and Associated Proteins AT4G02195 66.8 3.3e-104 375.9
Bhi06g01461 . 1 329 SNARE and Associated Proteins AT4G02195 63.4 2.1e-103 373.2
Bhi06g01461 . 1 328 SNARE and Associated Proteins AT3G05710 74.8 6.2e-127 451.4
Bhi09g00937 . 1 318 SNARE and Associated Proteins AT3G05710 64.0 2.5e-99 359.8
Bhi09g00938 . 1 317 SNARE and Associated Proteins AT3G05710 64.0 6.1e-98 355.1
Bhi09g01700 . 1 233 SNARE and Associated Proteins AT1G16240 70.8 1.8e-88 323.2
Bhi11g00534 . 4 232 SNARE and Associated Proteins AT1G16240 66.8 1.8e-80 296.6
Bhi11g00535 . 4 232 SNARE and Associated Proteins AT1G16240 66.8 1.8e-80 296.6
Bhi11g00536 . 4 232 SNARE and Associated Proteins AT1G16240 66.8 1.8e-80 296.6
Bhi11g00537 . 4 232 SNARE and Associated Proteins AT1G16240 66.8 1.8e-80 296.6
Bhi09g01700 . 1 233 SNARE and Associated Proteins AT1G79590 69.5 3.3e-86 315.8
Bhi11g00534 . 4 232 SNARE and Associated Proteins AT1G79590 67.2 2.4e-81 299.7
Bhi11g00535 . 4 232 SNARE and Associated Proteins AT1G79590 67.2 2.4e-81 299.7
Bhi11g00536 . 4 232 SNARE and Associated Proteins AT1G79590 67.2 2.4e-81 299.7
Bhi11g00537 . 4 232 SNARE and Associated Proteins AT1G79590 67.2 2.4e-81 299.7
Bhi12g02591 . 56 246 SNARE and Associated Proteins AT1G28490 71.7 1.7e-66 250.0
Bhi11g02112 . 1 264 SNARE and Associated Proteins AT3G09740 79.3 1.6e-112 403.3
Bhi10g00561 . 1 265 SNARE and Associated Proteins AT3G09740 67.4 1.3e-95 347.1
Bhi10g00561 . 1 265 SNARE and Associated Proteins AT3G45280 64.4 8.4e-90 327.8
Bhi11g02112 . 1 264 SNARE and Associated Proteins AT3G45280 65.2 3.5e-88 322.4
Bhi11g02112 . 1 261 SNARE and Associated Proteins AT3G61450 68.6 1.1e-94 344.0
Bhi10g00561 . 1 262 SNARE and Associated Proteins AT3G61450 61.0 5.2e-84 308.5
Bhi04g02346 . 99 342 SNARE and Associated Proteins AT1G51740 72.4 7.0e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010730 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32