Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02358 ATGTTTTGCAAGCACCTCCAAGTTTTTCTAAGAGAAACCATATGTGGAGGCTTTGCTTGGGGATTTCATGAAGGAGTTAAGAAGCAGAACCAATTTATTGGAGAGCACATAAGGAATCTGACGGAAACTAGACATAGGAGAGGTACAACCGACGACGATATCATTGCAGTTAGCAGATCGTTCCCTCACTTATCCCGTGGTGTAGTAGAGGATGTTCTTGTTAAAGTCGGTGATTTCATCTTCCCAGTAGATTTTGTGGTCTTAGATATGGAAGAAGACTTTGAAATTCCCATCATCCTTGGAAGGCCATTCCTAGCCATAGGCAGAGCATTGATTGATGTATATGATGGCAAGGTTACACTTTGGGTGAATGATGAGGAGATGAAGTTCAACATTTTTGTTCTTTCAAGCCTGAGGATGTGTGAACACTTTCTTTTTCCCGCCATTTCAAGCCTTTGCTCTCTCTTTCAATCACACTTCTTTCTCTTTGTCCATACCCTCAAATTTCCATCACAGAATCTTAAGAAATTGGTTACCGAACAGGACTGTCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCCCTCATCTGGCAGATGTTCGGAGCCAGTGCGGAGGAAGTGAAGGTGGAGAACAAAACGTGGAAAGTTGATGCTGAAACTAGAACTATCGATATAGAGTTGACCACCTTATCAAGTACAAACCACGTGGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGATATATTATTCAAGAGATTATCAAAGAAATAGCAAAAAACAGACAAATTGACTCCAAAGGGAAAAAGGGGCATAAAGTTTTGGTTCTAAATGACATTGACAAACTATCAAGGGAAGCCCAACACTCTCATAGGAGAACAATGGAGAAATATAGCTCATATTGTAGGTTAATTCTTTGCTGCAATAGTTCATCAAAAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGAGGAGCAGATTCTCAAGGTACTGGAGTTCATTGGGAAGAAAGAAAGACTGCAACTTCCATCTAGATTTGCTTCCCGTATTGTAGACAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGTCGTGTTCAACAGTATCCTTTTGTCAGTAACCAGGCAATACCACCAATGGATTGGGAGGAGTACATCATTGAGATAGCATCTGACATATTGAAGGAGCAGAGTCCCAAGAGATTGTTCCAGGTTCGCGGGAATTTATACGAGCTACTGGTTAATTGTATCCCACCGGAGATTATATTGAAGAGGCTGCTTTATGAGCTACTCGAGAAATTGGATGCTGAACTAAAGCATGAGATCTGTCATTGGGCCGCATATTATGAACACAGGATGCACCTTGGACAGAAAGCCATCTTCCACATTGAAGCTTTTGTGGCAAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACATTCGGCTAAAGAGAAGAAAAGTAGACCTTGAAGTTAGGCTGTTTCAGTTCATTCAAGAAAACCAATTGTAAGTTAATAGATTTGGTGCGACGTTGAATCAAGTCAATCTGGTGTATTTATCATATCTTCTTCGATCAGTTTTGTATGGCACTCTAGTT 1661 41.24 MFCKHLQVFLRETICGGFAWGFHEGVKKQNQFIGEHIRNLTETRHRRGTTDDDIIAVSRSFPHLSRGVVEDVLVKVGDFIFPVDFVVLDMEEDFEIPIILGRPFLAIGRALIDVYDGKVTLWVNDEEMKFNIFVLSSLRMCEHFLFPAISSLCSLFQSHFFLFVHTLKFPSQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIWQMFGASAEEVKVENKTWKVDAETRTIDIELTTLSSTNHVELTPSDAGFQDRYIIQEIIKEIAKNRQIDSKGKKGHKVLVLNDIDKLSREAQHSHRRTMEKYSSYCRLILCCNSSSKVTEAIRSRCLNVRINGPTEEQILKVLEFIGKKERLQLPSRFASRIVDKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYIIEIASDILKEQSPKRLFQVRGNLYELLVNCIPPEIILKRLLYELLEKLDAELKHEICHWAAYYEHRMHLGQKAIFHIEAFVAKFMSIYKTFLISTFG 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51519906 51532970 + XM_039026421.1 Bhi03g02358 31135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02358 503 CDD AAA 184 330 - -
Bhi03g02358 503 SUPERFAMILY post-AAA+ oligomerization domain-like 400 495 IPR008921 GO:0003677|GO:0006260
Bhi03g02358 503 Pfam DNA polymerase III, delta subunit 172 336 - -
Bhi03g02358 503 PANTHER REPLICATION FACTOR C SUBUNIT 3 171 495 - -
Bhi03g02358 503 Gene3D Acid Proteases 39 132 IPR021109 -
Bhi03g02358 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 386 IPR027417 -
Bhi03g02358 503 SMART AAA_5 182 341 IPR003593 -
Bhi03g02358 503 Gene3D - 164 338 IPR027417 -
Bhi03g02358 503 Gene3D - 401 494 - -
Bhi03g02358 503 Gene3D - 339 397 - -
Bhi03g02358 503 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 171 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02358 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101221072 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01318 Bhi-Chr3:27116510 Bhi03g02358 Bhi-Chr3:51519906 1.17E-64 dispersed
Bhi03g01319 Bhi-Chr3:27116510 Bhi03g02358 Bhi-Chr3:51519906 1.17E-64 dispersed
Bhi03g02358 Bhi-Chr3:51519906 Bhi12g01589 Bhi-Chr12:51651044 9.18E-35 dispersed
Bhi11g00361 Bhi-Chr11:8642357 Bhi03g02358 Bhi-Chr3:51519906 1.27E-18 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G14700 64.3 6.8e-244 841.3
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G12620 65.9 6.2e-253 871.3
Bhi04g00329 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.1 2.3e-140 496.1
Bhi07g00500 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00501 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00499 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00502 . 9 362 Core DNA Replication Machinery Family AT2G01120 67.0 1.6e-135 480.3
Bhi12g01864 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi12g01863 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi06g00870 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.3 4.9e-96 348.6
Bhi05g02013 . 5 804 Core DNA Replication Machinery Family AT1G79150 59.2 1.8e-247 853.2
Bhi11g01474 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1351.7
Bhi03g00062 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.9 4.8e-268 921.0
Bhi05g01792 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1151.7
Bhi05g01791 . 1 827 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1125.2
Bhi06g01859 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.8
Bhi09g00842 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.4 0.0e+00 1221.1
Bhi10g00804 . 31 520 Core DNA Replication Machinery Family AT2G29680 59.2 2.7e-161 566.2
Bhi10g00804 . 31 481 Core DNA Replication Machinery Family AT1G07270 57.3 3.1e-140 496.1
Bhi09g01348 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.7 8.8e-257 883.6
Bhi11g02141 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Bhi11g02143 . 4 691 Core DNA Replication Machinery Family AT3G09660 77.1 6.6e-300 1027.3
Bhi11g02142 . 12 760 Core DNA Replication Machinery Family AT3G09660 69.4 4.3e-299 1024.6
Bhi05g00892 . 16 639 Core DNA Replication Machinery Family AT2G14050 78.1 2.0e-286 982.2
Bhi05g00890 . 16 654 Core DNA Replication Machinery Family AT2G14050 76.3 2.1e-283 972.2
Bhi05g00891 . 16 640 Core DNA Replication Machinery Family AT2G14050 76.2 4.4e-278 954.5
Bhi10g01853 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.2 1.0e-115 414.5
Bhi09g02713 . 7 969 Core DNA Replication Machinery Family AT1G77320 50.1 4.2e-259 892.1
Bhi09g00040 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 9.8e-75 277.3
Bhi11g01039 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01040 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01038 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01041 . 10 113 Core DNA Replication Machinery Family AT3G12530 76.0 6.7e-44 174.5
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi10g02136 . 1 1552 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1758.8
Bhi04g01666 . 2 623 Core DNA Replication Machinery Family AT1G67630 59.2 3.1e-204 709.1
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi06g00131 . 7 450 Core DNA Replication Machinery Family AT5G41880 65.0 4.9e-175 611.7
Bhi03g01767 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1793.9
Bhi11g02542 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.1 1.1e-203 706.8
Bhi11g02541 . 1 458 Core DNA Replication Machinery Family AT2G42120 71.8 3.3e-200 695.3
Bhi11g02540 . 1 439 Core DNA Replication Machinery Family AT2G42120 72.0 1.3e-191 666.8
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi12g00555 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 6.6e-37 151.0
Bhi10g00062 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2967.6
Bhi10g00064 . 1 1984 Core DNA Replication Machinery Family AT1G08260 72.4 0.0e+00 2875.9
Bhi10g00063 . 1 1679 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2278.8
Bhi10g00062 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2937.9
Bhi10g00064 . 25 1984 Core DNA Replication Machinery Family AT2G27120 69.3 0.0e+00 2710.3
Bhi10g00063 . 1 1786 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2289.6
Bhi08g01976 . 7 487 Core DNA Replication Machinery Family AT5G22110 70.1 8.0e-195 677.6
Bhi10g00207 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00210 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00208 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.4 1.1e-309 1060.1
Bhi10g00209 . 1 891 Core DNA Replication Machinery Family AT5G22010 61.0 2.6e-292 1002.3
Bhi11g00361 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 5.8e-173 604.4
Bhi03g02358 . 171 503 Core DNA Replication Machinery Family AT5G27740 82.3 6.0e-160 561.2
Bhi09g02708 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.7e-153 539.7
Bhi04g01892 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.6e-155 546.6
Bhi06g01594 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01595 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01596 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi11g00244 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 1.1e-193 674.1
Bhi11g00248 . 1 353 Core DNA Replication Machinery Family AT2G06510 60.0 1.1e-132 471.5
Bhi02g00093 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 1.9e-246 849.4
Bhi11g00244 . 10 812 Core DNA Replication Machinery Family AT5G45400 51.7 4.7e-227 785.4
Bhi11g00248 . 1 462 Core DNA Replication Machinery Family AT5G45400 61.4 2.4e-162 570.5
Bhi02g00093 . 10 618 Core DNA Replication Machinery Family AT5G61000 67.4 1.5e-243 839.7
Bhi11g00244 . 5 798 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.7
Bhi11g00248 . 1 448 Core DNA Replication Machinery Family AT4G19130 61.3 3.4e-155 546.6
Bhi02g00753 . 1 224 Core DNA Replication Machinery Family AT3G02920 51.3 4.7e-57 218.8
Bhi11g02323 . 1 106 Core DNA Replication Machinery Family AT4G18590 66.0 1.5e-37 152.9
Bhi02g02229 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.0 4.2e-189 658.3
Bhi02g02228 . 1 376 Core DNA Replication Machinery Family AT5G26680 86.5 3.7e-185 645.2
Bhi01g00125 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g00124 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g02687 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 4.6e-115 411.8
Bhi10g00145 . 1 804 Core DNA Replication Machinery Family AT1G08130 66.3 1.5e-296 1016.1
Bhi10g00144 . 1 765 Core DNA Replication Machinery Family AT1G08130 62.9 4.3e-275 944.9
Bhi10g00145 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 832.0
Bhi10g00144 . 204 765 Core DNA Replication Machinery Family AT1G49250 64.6 5.6e-220 761.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008861 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34