Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02516 AACAAGAAGGAAAAAAAGAAAAGAAAAAAAAATATGAGGGTAAAGAGAGCATCAGCAACAGTACCTCCACGCCCCCGGTCCCTAGTGAGAGAAAAACTAAGAGAAAAAGAGAGAAGAAAAAAAAAAGCTACAAGAAAACAAGATCCACCTCGAACCTCTCTTCATCTTCAACCCTTTTGTGAATTGTGACCCCCCTTCTTCATCATCCATCGCCCTCATAGTTCTTGACCCCCTTCATCTTAATCTTCAGAATCATCCTTGCCCATCTTCCCTTTTCTCTGTTTCTCTGTGTTCTTTTGATTCACAGAAGGATTCTTGTATCTGGGTTTTGTCTATTTCTGTTTATTACTGTTGCTAATCGTATTAATTGACTTGGGTTCTCTTTAGTTTCTGGAAATTTTTGTTGTTTTTGGGCTTCTTCTTGAAAGGGGGGTTTGAACTGTTGACCAGGAGGAAGAACAGTGAATTGGGTTGGAGTTTGATTTGGGGAATAATGAGAGAAGAACACTCGAATTGGTTCTCTAGGTGGGAAGAGGAGCTTCCATCTCCAGATGAATTGATGCCTCTTTCTCAAACCCTAATAACCCCCGATCTAGCTTTGGCTTTTGATATTCAGAATCCTAGCAATAGCAGTCCGCCGTTGCCTTGCCCATCTCCGCCGCTTTCGAATCCTCTGCCTGGCTCTGGCAACGGAATTGCTCCGCCCAACTCGGCGGATTTCGGTGATTCTGCCGATTTGGGCTCCGGCGCCGCCGGTGACGAGCCGGCTCGGACCCTCAAGCGGCCACGCCTTGTTTGGACGCCTCAACTCCACAAGCGTTTCGTCGATGCTGTTGCTCATTTGGGGATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTAGATGGCTTGACTAGAGAGAACGTAGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAGCGGATGCAGGGCTTGTCCGGCGGCGGCGGTGGCGGCGGTGGCGCTTTGGTTGGTTCCTCCGACCCCGCCACCGACCATTTGTTTGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCTGCTCGTACTAGTTCAGACCATTTCTTGCCCTTTGTTCCCATGGCCACTCTGCAGCAACACCACCATCACCAGCAGCAGATGGCTGCTGCTGCTGCTGTCGCCAGCCATTCACAGCTCCAGCCGCCGTATCATCGGCAGGTCGGGCATTTCGGTTCGCCACCGAATGGGCAGTTTGAGCATCCATTTTTAGCTAGACAGTCCCAGCCTATCCATAGAATGGGAGCATCAGTGCATAATTCAGTTCCTAATTACATAGAGGATTTGGAATCAGCCAATGCCAGCGGAGGAAGAAAAGTCCTCACCTTATTTCCTACTGGGGATGATTGAGCTTTGTTTGTTCCTCTTCACTGATCTTTTCTGTTCTGTTCTAATTCTTGTGGAAATTGGTATAAATGTATTATGGGTCTGATCTGAAAATCTTGATGTTATCTTAGTTGTTGTTTCTATATAGTTCTTTCTAATGTACCTCCATATCTATTTAGTTGGCTTGGCTGTCATTAAAATATGAAACTCATGACCAAACCCAAAGTGTTCACTAGCTTACTCCTTTTACATATAGGTAGTAGAGAGACCCATCCCTTTAATGGTGGTAAATAGAGGGAGGTAGGGAGTTTATCTTTCGTCTGTCAAGTTTCCCCCACATGTCCTGTTCTTTATTGGTTGCTGTCTATCATATCTGACGATCAGTTCCTCCTCGTGTGGCTCGAACAGAAAATAATGCAATTAGATTTTTCTGCTTGCAGTTATTCAGATATCAAATTGAGGTTCATAAAATCCAAGAACCTGCTGCTGCTTGTGTAATCAGGGTGGAAGAGGTTCATATGTTGATATTGTTGGGATGAAGAAGCAACCAGCTGAGTTTTATTTTTTGGATTTAGAGCTCGAAGGACGACGGATTATGATGATGCGGGCATGTGATATCTATCCCTAGGTCAGTTTTCTGCAGAGATAGTATTTCTCTCACTTGTATATTATAAAAGTTGAAAAATTCATAGTATTTGAGCATCTATTTTAACAATTCTGAGTTCATTAGAATGTTGGTGTATTGACACTGTTACGTGAACATTTTGATGTGATCATTTTGACATCTCAGTAAATGAATCCATATCTTTTAACCTTATTTCCTTTA 2201 44.16 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNPSNSSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGGALVGSSDPATDHLFASSPVPPHLLHSARTSSDHFLPFVPMATLQQHHHHQQQMAAAAAVASHSQLQPPYHRQVGHFGSPPNGQFEHPFLARQSQPIHRMGASVHNSVPNYIEDLESANASGGRKVLTLFPTGDD 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60576885 60579085 + XM_039027045.1 Bhi03g02516 31293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02516 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Bhi03g02516 301 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Bhi03g02516 301 Gene3D - 94 156 - -
Bhi03g02516 301 MobiDBLite consensus disorder prediction 1 91 - -
Bhi03g02516 301 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Bhi03g02516 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Bhi03g02516 301 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 301 - -
Bhi03g02516 301 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 301 IPR044841 GO:0003700|GO:0006355
Bhi03g02516 301 MobiDBLite consensus disorder prediction 1 18 - -
Bhi03g02516 301 MobiDBLite consensus disorder prediction 46 60 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02516 - - - csv:101216969 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02516 Bhi-Chr3:60576885 Bhi11g02825 Bhi-Chr11:75848906 6.22E-120 dispersed
Bhi03g02516 Bhi-Chr3:60576885 Bhi08g00576 Bhi-Chr8:19099035 5.91E-47 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
801 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Bhi TF