Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g02660 TTTTCTTTTAATCCCATTTTCAATTTCCGTTTTTGTTTTTTGTTTTCCATGTTCGTATCGATTTTTCTACTTTTGAGCCATACCCAGAATTTATTATTTGAATTTATAGTCTATATCTGCAATTGGGCACCGAATTCTTACCTGGGGATATGGGTTTTTTGTTTTGTTTTGATTTTTGTAAGATTTTCTTCTGTTATTGTTTTTGGTTTTTGTGGGGTTTTGTTTTTCTTTCTGGAGACTTGTTAATGAGGGTCTTGTTTTATTTCGTTCCTCAAGGATTGAACTCATGGATGGGTGATGGTAGCATGTCGTGAACACTTTCCATTAATACCTTCAAGAACTCTATTAAGATTTAAATAAGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAAACAGAGAATAATTCTACATCTTCGAAAGCTGCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAGGAATTGCTTGAATGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAGTGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAATTGTTGCCCGACCTGTCGTCATGAACTTGGAAATATTAGGTGCTTGGCATTGGAAAAGGTAGCTGAGTCACTGGAAATCCCCTGCAGATACCAAAATTTGGGTTGTCAAGATATTTTTCCTTACTACAGTAAGCTAAAGCATGAGCAACATTGTCGATACCGCCCTTACAACTGCCCCTATGCTGGATCAGAGTGCTCAGTCACGGGCGACATCCCGTCTCTTGTTGCACATCTCAAGGATGATCACAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTCGAGAATGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGATGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAACGGGCGTAAACTGATATGGCAAGGGATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACGGGTCGAATATGGAAAGAAGAATGAGATCGAGGGATGACGACGCCCCCATGGCATTGAGGTGAATGTATTATTGTACAGTTAAAAACAAGTTTGTTAGGCCAACACTCAACAGCCGGGGTTTGCTCCGAGTGCTGAAGAAGCTTTTGGAGAAACTTCCAAGCTAATATAAAAAATGTAATTTACCAAGTGAATCAAAAAATGCATTTTGCTGCCTCTTGTTTTATGTATTTAAAGCCAAGTTTTCTCCA 1511 41.23 MAPGSSTCKEVVDSHPSVSGHDIAMSKTENNSTSSKAALGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQCPSGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRYRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66206047 66211766 - XM_039025851.1 Bhi03g02660 31437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g02660 307 CDD Sina 173 301 - -
Bhi03g02660 307 Pfam Seven in absentia protein family 101 300 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bhi03g02660 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 166 IPR013083 -
Bhi03g02660 307 CDD RING-HC_SIAHs 57 95 - -
Bhi03g02660 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Bhi03g02660 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Bhi03g02660 307 SUPERFAMILY TRAF domain-like 112 304 - -
Bhi03g02660 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 111 IPR013083 -
Bhi03g02660 307 SUPERFAMILY RING/U-box 53 100 - -
Bhi03g02660 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 306 - -
Bhi03g02660 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515
Bhi03g02660 307 MobiDBLite consensus disorder prediction 1 34 - -
Bhi03g02660 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02660 Bhi-Chr3:66206047 Bhi10g00387 Bhi-Chr10:8971291 6.32E-170 dispersed
Bhi03g02659 Bhi-Chr3:66206047 Bhi03g02660 Bhi-Chr3:66206047 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g02660 K04506 - cpap:110811721 590.497