Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00029 TGCTCAAGTACAGAAATTATAAAGATTATGAGTAAATTTTTAGGTGATACCGATGTTACGTGGCAGTGGCAGAGATAAGAGGATTCCTCCCAATCTCCGCCCTTACAGACCAATAAAGAACGAAACTACCGTTTTACAATCAGCAGTTTACCGAGCTGTTTTCTTCGTCTGAAAACCGCTTTCCCTCTCCAGTGCTCTCACTTCTTCCTAATCTGTAAAATTCCACATCTTCCCGAGGCTTTCCCTGTCTCTCCTTTTCTGTTCTTGAAGACACGTCTGTACTGTATACTCGACTCTCTATCTTTTCATCTTTCTCTGTCTCCACAGCTTCTCCCGCCATGGCTCTATAATCTTTGACTGAATCTGCTTCTTTATCGGCGGCGGCTTTTATGGCTTTTCGCAACCAGCTCTCTCGGGACCTTCCTCTTCATTACGCGAACCAGCCTCAACAGCAGCAACCGGAACGGCCGCTTTCTGATAACACTCTGCGCTCGATTCTATCTGATCAGCTCTCCGATCACTCTCCGGCTGGCGATGGTTCTAAGTCTGAGCATCCGCTTCAGAGCACTCCGAATTGGCTGAATACTGCGCTACTTCGGAATCAAACCCCTCATTCTCACTACTCTGGCGAGACCACGGCAACCGCTGCGGATAACGTCAACACCGACTTTCTTAATCTTCACACGACTGCTCCCAATTCTGCCGTTTCTCACCCATCCGGTCAATGGCTCTCCCGCCCGATCCTCCATCGCAATCAAAGTGATGTTATCGATGACGTCGCCGATGCCGCAGATGCTATGATTGGCGCTACTGCCACTTTGTCGCGTGAATCAGATGATTTGAAGAACAACAGCAGCGGCGGGGGAGCAGAGGGGGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCTCATGGTGGTGAGGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCTGAAATTCTGGCTCATCCTCTTTACGAACAGCTGCTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCGGTGGACCAATTGCCGAGAATAGATTCTCAGCTTTCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGCTGGGCAACGGTTCTCAGCCCATAGTCGGCAATGGAAAAGAGCTCGATCAGTTCATGACGCATTATGTTTTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTGCGTGTCCATGCAATGGAAGCAGTATATGCCTGCTGGGAAATTGAGCAATCTCTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACGGGTGCTACAATGTCTGATGACGATGAAGACCAGATAGATAGTGATGCTAATTTGTTTGATGGAAGTTTGGAGGGTCATGATGCTATGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAGATCCTTGATGGAAAGGGTGAGGCATGAATTGAAGCATGAACTAAAGAATGGATACAAGGAGAAAATTGTAGATATAAGGGAGGAGATTTTGCGAAAAAGGAGAGCAGGTAAACTTCCTGGTGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATATCCAACTGAGGACGATAAAGCAAAGTTGGTTCAGGAAACTGGTCTTCAACTGAAGCAGATAAATAACTGGTTTATCAACCAGAGGAAGAGGAATTGGCACACAAATCCTTCAACCTCAACAACCTTAAAGACTAAACGCAAAAGTAATGCAGGTGAAGCAACAGGCAACGACCAACAATAGCTTGATCAAAGAAAACAGAAACAACCAAAAGAAAAAGACGAGCCCCCTCGATCCGACGATTTCAAGTTGTATTGAAGCATTGAAATTGGAAATCATCGTCTGTTTTGGGGTTCAGCAGCAAGGTTGATGTGAATGTTAGGCCATTGTTATTTATATTATGCTGATAAGAATGTGAATGGCGGAGAATGAAACTACACAGAATATTAGAATTTTAAGTATGCAGGCTCTTATAGAACTTAATTGGGTGTCTTCCACTTGCTTTAGTGAGATGTTGAATTTTTCTTGGCGAGGAAAATAGATGTATAGTTGTAATAAGCTCTGTATTGGTTACTTTACAGTCATAGTAGCGGAGCCATTATAGCTTTTCTTGACACGTTTTAGATTCAAGATTGATTTGATTTGAAGTTTGTAGTTCATATGCTAAAATATAGCTTTTACAATATATACATATATTTGACTCAAA 2256 44.81 MAFRNQLSRDLPLHYANQPQQQQPERPLSDNTLRSILSDQLSDHSPAGDGSKSEHPLQSTPNWLNTALLRNQTPHSHYSGETTATAADNVNTDFLNLHTTAPNSAVSHPSGQWLSRPILHRNQSDVIDDVADAADAMIGATATLSRESDDLKNNSSGGGAEGVNNSDDVAVESDGNEGAHGGEAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLSRSQNVAAKYSSLGNGSQPIVGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQIDSDANLFDGSLEGHDAMGFGPLIPTESERSLMERVRHELKHELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEDDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKSNAGEATGNDQQ 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 648909 654263 - XM_039028993.1 Bhi04g00029 31638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00029 467 SMART KNOX2_2 247 302 IPR005541 GO:0003677|GO:0005634
Bhi04g00029 467 SMART HOX_1 381 446 IPR001356 GO:0003677
Bhi04g00029 467 Pfam KNOX1 domain 194 233 IPR005540 GO:0003677|GO:0005634
Bhi04g00029 467 Pfam KNOX2 domain 251 301 IPR005541 GO:0003677|GO:0005634
Bhi04g00029 467 Gene3D - 380 441 - -
Bhi04g00029 467 ProSiteProfiles ELK domain profile. 359 379 IPR005539 GO:0003677
Bhi04g00029 467 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Bhi04g00029 467 SUPERFAMILY Homeodomain-like 381 445 IPR009057 -
Bhi04g00029 467 MobiDBLite consensus disorder prediction 1 60 - -
Bhi04g00029 467 CDD homeodomain 382 443 IPR001356 GO:0003677
Bhi04g00029 467 Pfam ELK domain 359 380 IPR005539 GO:0003677
Bhi04g00029 467 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Bhi04g00029 467 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 48 457 - -
Bhi04g00029 467 MobiDBLite consensus disorder prediction 436 467 - -
Bhi04g00029 467 MobiDBLite consensus disorder prediction 147 181 - -
Bhi04g00029 467 SMART KNOX1_2 191 235 IPR005540 GO:0003677|GO:0005634
Bhi04g00029 467 SMART ELK_2 359 380 IPR005539 GO:0003677
Bhi04g00029 467 MobiDBLite consensus disorder prediction 11 60 - -
Bhi04g00029 467 MobiDBLite consensus disorder prediction 147 162 - -
Bhi04g00029 467 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00027 Bhi-Chr4:648909 Bhi04g00029 Bhi-Chr4:648909 0 dispersed
Bhi04g00029 Bhi-Chr4:648909 Bhi09g02965 Bhi-Chr9:77103515 0 dispersed
Bhi04g00028 Bhi-Chr4:648909 Bhi04g00029 Bhi-Chr4:648909 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
827 PF03791 KNOX2 2.00E-19 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00029 - - csv:101213817 832.787