Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00034 TACCATTTCGGCCCAAACACAGAGAACAGATCTAACGGGCGCTCGTAGTTTTGCAGCGAAGTCCCTGCTCCGTCAACAAACTGCCCCTCGGACCCATCGCCTTGTCTCCTCCGTCTCGTTCTCTCTGTGAACTCCAATCTCCATTTTCATTGATCCGATTTCCACTAAGATGGCGTCCTCTATCCTCCCTCTTGCTTCCGCCTCCTCTTCTGCTTCACGTTCCTCACTTGAGAACAAGAAGGGGAAGTGGAACCTTGGAAGTAGCTGTCTAAGCTTTGATCATGACAGAAACCATTTATTCGCGAAGACGAAGTCCTTGAGCAGGATATCTATGGTTGCTTCAGTTAATGTCTCTCGGTTTGAGGGGATAACGATGGCCCCTCCCGATCCAATTCTTGGAGTTTCTGAGGCTTTCAAAGCAGATACGCACGGAAACAAACTCAACTTGGGAGTTGGCGCATACCGCACAGAAGAGCTACAGCCTTATGTGCTTGATGTTGTGAAGAAGGTTGAGACACTTATGCTGGAGAGGGGAGATAACAAAGAGTATCTCCCAATTGAAGGTCTGGCAGCTTTTAATAAGGCGACTGTAGAGTTATTATTTGGAGCTGATAATCCAGTCATTAAGCAGCAACGTGTTGCAACTATTCAAGGTCTGTCGGGGACTGGTTCTCTTAGAGTAGCTGCTGCTCTTATAGAACGATACTTCCCTGGTGCAAAAGTTCTTATATCTTCTCCGACTTGGGGGAATCATAAAAATATTTTCAATGATGCAAGAGTTCCATGGTCTGAGTATCGATATTATGACCCTAAAACAGTTGGTTTGGATTTTGAGGGGATGATATCTGATATTAAGGCAGCACCTGAAGGATCATTTGTGCTGCTTCATGGTTGTGCTCACAACCCAACTGGCATTGACCCAACACCTGAGCAGTGGGAAAAAATTGCTGATGTCATTCAGGAAAAGAACCACATTCCATTTTTCGATGTTGCATATCAGGGATTTGCTAGTGGAAGCCTTGATGCAGATGCAGCATCTGTTAGGCTGTTTGCTGCTCGTGGTTTGGAGCTTTTGGTTGCTCAATCCTATAGTAAAAATCTTGGTCTTTATGCTGAAAGGATTGGAGCTATCAATGTCGTCTGCTCATCAGCAGATGCAGCAGTAAGGGTAAAGAGCCAGCTGAAGAGGCTTGCTCGACCAATGTACTCAAATCCTCCAGTTCATGGGGCTAGAATTGTAGCTAACATTGTTGGAGATCCATCACTATTTAACGAGTGGAAAGCAGAAATGGAAATGATGGCTGGAAGGATAAAGAATGTTAGACAGAAACTCTATGATAGTCTCTGTGCAAAAGATAAAAGTGGGAAAGATTGGTCCTTTATACTCAAGCAGATTGGCATGTTCTCATTCACAGGCTTGAGCAAAGTTCAGAGTGATAATATGACGGACAAGTGGCATGTATACATGACAAAGGATGGACGAATATCTTTGGCTGGATTGTCGTTAGCTAAGTGTGAATATCTCGCAGATGCCATCATTGATTCATTCCACAATGTACGGTAAAATGGATAT 1573 44.25 MASSILPLASASSSASRSSLENKKGKWNLGSSCLSFDHDRNHLFAKTKSLSRISMVASVNVSRFEGITMAPPDPILGVSEAFKADTHGNKLNLGVGAYRTEELQPYVLDVVKKVETLMLERGDNKEYLPIEGLAAFNKATVELLFGADNPVIKQQRVATIQGLSGTGSLRVAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADAASVRLFAARGLELLVAQSYSKNLGLYAERIGAINVVCSSADAAVRVKSQLKRLARPMYSNPPVHGARIVANIVGDPSLFNEWKAEMEMMAGRIKNVRQKLYDSLCAKDKSGKDWSFILKQIGMFSFTGLSKVQSDNMTDKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHNVR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 790679 794324 - XM_039028071.1 Bhi04g00034 31643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00034 464 PRINTS Aspartate aminotransferase signature 237 256 IPR000796 GO:0006520|GO:0008483
Bhi04g00034 464 PRINTS Aspartate aminotransferase signature 268 280 IPR000796 GO:0006520|GO:0008483
Bhi04g00034 464 PRINTS Aspartate aminotransferase signature 336 361 IPR000796 GO:0006520|GO:0008483
Bhi04g00034 464 PRINTS Aspartate aminotransferase signature 405 423 IPR000796 GO:0006520|GO:0008483
Bhi04g00034 464 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 306 319 IPR004838 GO:0003824|GO:0009058|GO:0030170
Bhi04g00034 464 Gene3D - 122 363 IPR015421 GO:0003824
Bhi04g00034 464 CDD AAT_like 91 456 - -
Bhi04g00034 464 SUPERFAMILY PLP-dependent transferases 62 458 IPR015424 -
Bhi04g00034 464 Gene3D Aspartate Aminotransferase, domain 1 67 456 IPR015422 GO:0003824
Bhi04g00034 464 PANTHER ASPARTATE AMINOTRANSFERASE 13 461 IPR000796 GO:0006520|GO:0008483
Bhi04g00034 464 Pfam Aminotransferase class I and II 89 456 IPR004839 GO:0009058|GO:0030170
Bhi04g00034 464 PANTHER ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 13 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00034 K00811 ASP5; aspartate aminotransferase, chloroplastic [EC:2.6.1.1] - csv:101213342 865.144
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00034 Bhi-Chr4:790679 Bhi09g02426 Bhi-Chr9:66054688 9.78E-167 dispersed
Bhi04g00033 Bhi-Chr4:790453 Bhi04g00034 Bhi-Chr4:790679 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g534 . . . Bda03g00085 . . . . . . . . . . Sed11g1156 . . Bhi04g00034 Tan02g2749 Cmetu03g1805 . . . Lcy13g1814 . . . . . . . . Cone7ag1676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006495 1 2 1 0 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00034 Bhi_Chr04 FPKM 2.31422 3.007355 6.372615 6.444367 13.56297 12.388561 12.463606 0.130643 0.08328 0.297914