Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00040 AAAAAAAAAATTCCCCTCTCTCACTTCATAATATAATCCTCTCCTCATCCTAAAACACAAAAAATTGAAAGAAAAAAAAAAAGGTTCAATTTTTTCATCTATGGAGTCCTCAACCTCTCCACCTCCAAAAACGCCGCCGTCCCATAATCAAGAACAAAACGACGACGAATTAGAGGAAAACCACCACCATCTCCGCCTTGGGATTCCGGCGGAGGAGCTGAATCTGATCGAAGGTTTGAAAATGGGTTCATCGGAGCCGAGGGTATTTTCGTGTAATTTTTGTCAAAGGAAATTTTATAGCTCACAAGCACTTGGAGGCCATCAAAATGCTCATAAAAGAGAGAGAACGTTGGCCAAACGAGGCGGTCAACGCTTTCCGGCATTCGGTGGCTACCACCACTATGCGGCGGCGCCGTCTTTTCCACACCCCGGTGGTCCCAACAACAACAGATCGCTTGGAATTCAAGTTCACGCGATGGTACATAAACCGTCTCACCACGCGCCGGTTTCTTCCTCTTCAAGGTATGGGATCCTCTACGACCGTTCTTACGGTTGGTCTAGAACTCCCATCCATCAACAACCCGGTATTGGGAAGCTACACTTGATGAACGCTGGCCATGCGATTAATCATACCGATGGATTCCCGCCACGTGGATGCAACTCCGTCGGTAGATTCGACTTTGACGTCGTCCGATCAACGGCGGCGGCTGCTGACGACACCCACAAAGTACTCGACTTGTCTCTCAAGCTGTAATTTAACTAATACAAATTTCTCTCCACTTTAGAACTATAAATCTTCTTTTTCTTCTTCTTTTTTTTTTTCCTTTAATTTTTTTTAATGCTTTGATCTACTAAAGTTTCGATTTTGATATGAATGAAGTCAATATTATAGATAGTGAAGCTACAATTTGCCCAAATTAATGTTTGAATTATATTCTTCTTT 943 42.95 MESSTSPPPKTPPSHNQEQNDDELEENHHHLRLGIPAEELNLIEGLKMGSSEPRVFSCNFCQRKFYSSQALGGHQNAHKRERTLAKRGGQRFPAFGGYHHYAAAPSFPHPGGPNNNRSLGIQVHAMVHKPSHHAPVSSSSRYGILYDRSYGWSRTPIHQQPGIGKLHLMNAGHAINHTDGFPPRGCNSVGRFDFDVVRSTAAAADDTHKVLDLSLKL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 986932 987874 - XM_039030216.1 Bhi04g00040 31649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00040 217 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Bhi04g00040 217 Gene3D Classic Zinc Finger 40 93 - -
Bhi04g00040 217 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 217 IPR044246 GO:0009788
Bhi04g00040 217 MobiDBLite consensus disorder prediction 1 25 - -
Bhi04g00040 217 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Bhi04g00040 217 PANTHER ZINC FINGER PROTEIN 1-LIKE 16 217 - -
Bhi04g00040 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00040 - - - csv:105434672 367.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00040 Bhi09g02982 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00040 Bhi-Chr4:986932 Bhi07g00158 Bhi-Chr7:8551538 3.57E-21 dispersed
Bhi01g03630 Bhi-Chr1:91939389 Bhi04g00040 Bhi-Chr4:986932 2.06E-35 transposed
Bhi02g00766 Bhi-Chr2:15501827 Bhi04g00040 Bhi-Chr4:986932 3.95E-16 transposed
Bhi05g00118 Bhi-Chr5:2052063 Bhi04g00040 Bhi-Chr4:986932 4.02E-13 transposed
Bhi04g00040 Bhi-Chr4:986932 Bhi09g02982 Bhi-Chr9:77386712 1.43E-23 wgd
Bhi04g00040 Bhi-Chr4:986932 Bhi09g00520 Bhi-Chr9:10980069 4.93E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g525 . . Bda01g00760 . . Bpe02g00545 . . . . . . . . Sed11g1150 . . Bhi04g00040 Tan02g2755 Cmetu03g0839 . Hepe10g0223 . Lcy13g1820 . . . . . . . . . . . . . . . . . . . . . . . Sed06g2059 . . . . . . . . Bhi09g02982 Tan01g3585 Cmetu07g2142 . Hepe01g1980 Mch11g0516 . . . . . . . . . . . Cme07g00107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013564 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00040 Bhi_Chr04 FPKM 1.624344 1.730369 1.353294 0.639735 3.514072 2.712295 3.266392 0.0 0.0 0.0