Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00043 ATATAAAGAAAACAAAAGAAAAAGAGAAGAAAATCATTAGTCTCTGTTTTCAGTCGAGTGAGTGCGGGATTTCCAAGGACGAAGAAGAAGAACAACAACACGACCCTTCTGAAGACTGAAACCGATTACCCTTCGTTTGGATTAATCCGCCACCGCCTTCCGCTTCGCCATATGGGTGTTCCCTTGAAATGTAGTAGTGCGCTGTAAGAATCGTTTACAGACTAATGGCCAAGTGTCATTCCAACACCATCGGATCAGTCGCTGTCGACGGAATCGCCGGCGCCAATGCAGCTACTAGACATTTCCGATTCTGTACTTCCTTTTCTGGAGCTGCATTCCGTCGCAGAATCTACGATGCTGTTAGTTGCGGTGGGAGTTCTCGGTACCGCCACCGGTACAAGGATGAGATGATGGACGAAGACCCGAGTACGGAGAACGGATCGGCTTCTGCTTCTAGGGGTTTGAAAGAGGAGGAGCAGCAGCGGAGGAATCGGAGATTGGGTAATGGAAGATCCGATAAGCTTGTGGATCTTCTGAATTTGGCTGAGTCGGTGGAGCCAGAGAATGAGGCGGAAACGAGGAGGAAGGAGGAGGAGTTGAAGGAGTTGAAACGGACGGTGAAGGATTTGCAGGCTGAGGATTTGGGGATGCGAAAGTCGGCGGCGAGCAATGTGAGGCTTATGGCTAAGGAAGATTTGGTAATACGAGGGACGCTTGCTCTTCTCGGAGCCATTCCTCCTCTCGTTGCGATGCTTGATTTGGAAGATGAACAATCCCAGATCGCTGCCCTTTACGCACTACTAAACCTTGGAATCGGCAACAATGCGAATAAGGCAGCAATTGTGAAAGTTGGGGTCATCCACAAAATGTTAAAGCTCATTAAATCACAGACTGCACCAAACTCATCGGTTACAGAGGCAATAATTGCAAACTTCCTCGGCTTGAGCGCATTGGATTCAAACAAGCCTGTAATTGGATCGTCTGGTGCGATCCCCTTCTTGGTCAAATCCCTACAAAACACCGACAGTAGAATCAGCAATCAGGCTCGGCAGGATGCTCTAGAAGCGCTCTTCAATCTTTCAATTGCCTCATCAAATATCTCAATTATATTAGAAACGGATATAATCCCATTTCTTCTTAACATGTTGGGCGACATGGAAGTAAGTGAAAGGATCCTTTCAATTTTAAGCAACGTGGTATCAACCCCAGAAGGTAGAAGAGCAATAAGCGTTTTTCCAGATGCATTTCCAATATTAGTTGATGTTTTAAACTGGACAGATTCACCTGGGTGTCAAGAAAAAGCATCCTACGTTTTAATGGTGATGGCACATAAGCTATATGGTGAAAGACAAACAATGGTAGAAGCAGGGCTTGTATCTGCTTCTCTTGAATTAACGCTCTTGGGCAGTGCATTGGCTCAGAAAAGGGCATCCAGAATTTTGGAGTGTTTGAGATATGATAAAGGGAAGCAAGTTTCTGAAAGTTTTGGTGGGAATCTGAGTGCTGCAGTGTCTGCTCCCATTATTGGGACTTCATCTTCTTCAAATTGTAATAATATAGATTCCAAAATCTATGTGGAAGAATCTGAAGAAGCCATGAGTATGGAGAAAAAAGCAGTGAAGCAATTAGTCCAACAGAGTCTACAGTACAACATGAGGAAAATTGTGAAGAGGGCCAATTTGCCTCAAGATTTTGTTCCTTCAGAGCATTTTAAGTCGCTTACAGCGAGTTCAACTTCCAAAAGCCTACCATTTTAACATCATTGAGATGAAATTAGCCTCTTCTTTTAAGTATAATCAAATAGCAGTCAGTTTCATTAGAGTTCTTTTAGTCTTTTTAGTTTTTTTGGTTATGTGAAAATAAAATATAAAGGACCTACCTCTGCTTCCAAATTCAAACCTTAGGCAACAACCAGATCCAGAATCAATTACTTTGATATCTTCTCTGGCGGTGGAATTGTCTAAAGCTTGAAAATTCCTGTGGCTGTTTTCACTTAGCATAACAAAGCTCATGGCACTGCTCTAGTACAGATCAGTGGGTCACGTTCGACCCACCATTACAATTCAGCCTACCTTGGTGGCCCCTTTAAAATCTTAACTCCGCACAGATCTGGAACAAGGAGCTTGCTGAGCTGTTTTTAGCAGAGGCACAATAATGTACTCCAAGGCATGTCTTGAGCACGAGGTATTGTTTGTAAATATAGAATTGGGTGAATTCATTATGTGCCTACATTAAGTAATCTATTTTTCAATTTAGAGTTGCACTTCTGTCTTATCTTTTTTACTTTTGCAGTGTCTCCCATGTAAACTCTTCTCTTCTCTTGGCCTGTAGATAACTTTAGATTATAATATCCATCTCATTCTCTCTTCTGTAAACAGTTTGTGAAACCTTGACCTTCATTTCCTCGTGTTTTGACTAGTTGTGAGATGAAATTGATAGCTATTTCTCTGATCAAATTCTTCCTGTTGGTGCTCAATAGTCAAGCTTGTTGGG 2493 42.52 MAKCHSNTIGSVAVDGIAGANAATRHFRFCTSFSGAAFRRRIYDAVSCGGSSRYRHRYKDEMMDEDPSTENGSASASRGLKEEEQQRRNRRLGNGRSDKLVDLLNLAESVEPENEAETRRKEEELKELKRTVKDLQAEDLGMRKSAASNVRLMAKEDLVIRGTLALLGAIPPLVAMLDLEDEQSQIAALYALLNLGIGNNANKAAIVKVGVIHKMLKLIKSQTAPNSSVTEAIIANFLGLSALDSNKPVIGSSGAIPFLVKSLQNTDSRISNQARQDALEALFNLSIASSNISIILETDIIPFLLNMLGDMEVSERILSILSNVVSTPEGRRAISVFPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKLYGERQTMVEAGLVSASLELTLLGSALAQKRASRILECLRYDKGKQVSESFGGNLSAAVSAPIIGTSSSSNCNNIDSKIYVEESEEAMSMEKKAVKQLVQQSLQYNMRKIVKRANLPQDFVPSEHFKSLTASSTSKSLPF 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1151633 1154843 + XM_039028105.1 Bhi04g00043 31652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00043 510 Coils Coil 451 471 - -
Bhi04g00043 510 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 510 - -
Bhi04g00043 510 Coils Coil 118 138 - -
Bhi04g00043 510 MobiDBLite consensus disorder prediction 59 94 - -
Bhi04g00043 510 Gene3D - 127 271 IPR011989 -
Bhi04g00043 510 Gene3D - 272 421 IPR011989 -
Bhi04g00043 510 SMART arm_5 199 242 IPR000225 GO:0005515
Bhi04g00043 510 SMART arm_5 243 287 IPR000225 GO:0005515
Bhi04g00043 510 SMART arm_5 288 326 IPR000225 GO:0005515
Bhi04g00043 510 SMART arm_5 156 197 IPR000225 GO:0005515
Bhi04g00043 510 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 510 - -
Bhi04g00043 510 MobiDBLite consensus disorder prediction 80 94 - -
Bhi04g00043 510 SUPERFAMILY ARM repeat 132 408 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00043 - - - bhj:120074980 878.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00043 Bhi-Chr4:1151633 Bhi09g02989 Bhi-Chr9:77613881 0 dispersed
Bhi08g02232 Bhi-Chr8:63596744 Bhi04g00043 Bhi-Chr4:1151633 3.09E-39 transposed
Bhi04g00043 Bhi-Chr4:1151633 Bhi09g02988 Bhi-Chr9:77613881 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g514 . . Bda01g00768 . . . . . . . . . . . Sed11g1146 . . Bhi04g00043 Tan02g2758 Cmetu03g1431 . Hepe10g0221 . Lcy13g1826 . . . . . . . . . . . . . . . . . . Bda13g01245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00112
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001538 3 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 3 2 1 2 2 3 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00043 Bhi_Chr04 FPKM 6.453125 13.287584 10.977458 9.63172 8.998638 7.4815 12.622048 26.10128 28.423906 29.645676