Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00044 TTATTTTTTTTATTTTTCCCAGCAAAATATTTCGAAACACACATAATTTTTTTTCCCTCTCTGTGAGAAAAAAACCCTAGCTCGTCCTCTCTCCTCGTCCTCTCTTTCAAGTTTCCCTCCCTTTTCTATCTGATTTCCTCCATTCCCATCCGATTCGGTGGGTTCTTCTTCTTCAATGGACTTCAATTGAACTGAATCCTTCCTCACTTTGAAGGATCTGGGAGCTTAAGCTGTCAAACCGAGCAACAATGGCGTCTTCCGACAAGGATGTCGAAGAACAGCTTTTGGAAGCTGGCAATAAGATTGTTGACCCTCCTACTTCAGTTGAAGAACTCCTACCTCTTCTCGACAAAATTGAGAGTTTGCTGGCAAAAGTTGAACAATCCCCTTCAAAATCAATGCAAACTGCACTCACTCCGTCACTGAAAGCCCTGGTCTCTGATCAGCTTCTAAGGCATTCAGATATTGATGTCAAAGTTGCAGTTGCTGCATGCATCAGTGAAATAACTAGGATCACTGCACCTGATGCCCCTTACAACGATGAGCAAATGAAGGAGGTATTTCATCTGATTGTATCATCCTTTGAAAATCTCTCCGACAAGTCAAGTCGATCGTATGCAAAGAGGGCATCCATTCTTGAAACTGTTGCGAAGGTCAGATCATGTGTGGTCATGCTGGATTTGGAATGTGATGGATTGATCATCGAGATGTTCCAACATTTTCTTAAGACTGTAAGGGATTATCACCCAGAGAATGTATTTACGTCAATGGAGACAATTATGAGCCTTGTTTTAGAAGAAAGTGAAGATATGGCTGTAGGGCTCCTCTCTCCTATCTTAGAAAGTGTGAAGAAGGACAATGAGGAAATTCTACCTATTGCTCGGAAGCTAGGAGAGAAAGTTCTTGACAACTGTTCTACCAAGCTCAAACCTTATTTGGTTCAAGCTGTAAAAACCTTGGGGATTTCTTTTGATGATTACAGTGATGTTGTTGCTTCCATATGCAAAGATCTTTCTGGCTCTCTTGAGCCTAGTAATCTTCACGATGCTGGTGAAAATGTGGTTGCTGAGAGCAAGTCAGTCAGAACGTCCGAGGATGAGGTTGACGAGAAACTGACAGAAGTGGCCACACCTGAGAGAGTTGACATGGCCGTGGAGAAACATCGTGATTCAGTTAAGAGCAATGGAGTTGCAGAGGGGGGTGAGGATGGCTCGGTGTCTACTCTGGAGAACAAGAAGGAAGAACATGGTCAGGAGTGCAAAGAGGTGAAATCACCCAAGAGTCCTGAACCTGCCAATTTGAGCTCTGAGAAGGCTAGCAATGTGAAGGAAAGATCTGAAAAGTCCTCTAGGAAAAAAGGTAAAAAATCTAATCAATCCTCGAAGTCTACTGAAGTTTCTCATGTTGATGCCCAGAAGGGATCTGAGAGCCAGCCAGAACGTGAAAGCCACAGTGAACATCCTGGTTCTCCTTGTGAGAACCGGTCTGCTGAAAATTTGCCTTTGGAAAATGAGGCTGATGCCAAGCCTTCCTCACCCAAGGCCATGGAGGTCGAATCTGCAAATGTTGCTTCACCTTCACTTAGTGAAAGCGTTCCTGATGAGTGTAACAATAAGTCTGGACAGGGAAATAAGGCTGGACAGGCAAAAAAGAAAGGCAACTCAGCGAAAGAGGTGGTGGCATCATCTGCAGAAGTTTCAAAAGAATCATCTGATGGAATGCACGACTCAGGAGCCAAGCTTGATTCAGATGCTGAAGAGAAGGCTCCTGCTGGAGTTTCTGATGATACCAAGACTGCAGCTGAAGACTCAGAAGAAAGGGAAAGTGATGCTACCAGTGATTATGAGACTAAGACATTGAAGCATTCTGCTAGGAAGGGAGATGGAGCCAGTAAGAGTAGTGGTGGTTCTTTAAAACAATCAGAAGCTAAGAGAAAGAAGGGATCGGGGAAATCTATTTCTGGAAAGAACATGAAAAAATTATCAGGTGATGATGATAAAAAGGAAGCAACACCTGTGCTGAAACCAACCTCGAAAACCACCAAAGATGAGAAGATCTTGGACAAGACTCCAACAGCAGTTTCCAAGAGGAAACGAACTCCTAGCAAAGAAAAAGAGTCTGAAACCAAGAAATTTGATGAAACTTTGGTTGGTTCGAAGATAAAAGTGTGGTGGCCAGAAGATCGCATGTTTTATGCAGGTGTAGTCGAATCTTTTGATCCAAAAAGAAAGAAGCACAAGGTTTTGTACACAGATGGAGATGAAGAGATACTATATCTTAAAAAGGAGAGATGGGAATATATTGACGATGAAACTGAATCTGAACGAGAGGAAGCAGCAGATTTAGTGAGATCGGAATCTCCAGCAGAGATACCTCAAAAGAAAAAGGCAAAACTCAATGCCAATGAGTCTGCAAAGCGAGGAAAGATGGATGTTTCACCCAAAAAGGGTGGAGTGACTTCGTCCAGCAAATCTAAGGTTGCAGCTACAAAAACTGACCGGAGTAGTGGCAGCAAAGTTGAAAGCAAGTCAAAAGAGAATACCCCTAAGGTTGGAAGACCTACATCTGTTACAGGTAGCAAATCAAAGGATCAAAGCACTCCTAAAAGTGGAAGCAAAGCTGGTAAGACAGGTCCGAAAATTTCTGGCAAGTCAAAGACCGACGATGCTGAATCACACAAGACTAGCAAATCAAAGGAGGATGAGACATCTACACCTGCTGTTGTTGCGAAGTCCAAGCAAGATGTATCGAAGACGGGGAAGTCCAAACAAGAGACCCCAAAAGCTCCTGCAATTTCAAAGGGCAAATCTACCAAAACAGGCGATAAATCTAATAGTTCGAATCTCTCCACCAAGGTTAAGTTCACATCTTCAAAATCAAAAGAAAGTGGAGATGCAAAGAATTTGGCTTCTTCCGCAAAAACAGTGGAGAATTCAAAGGGAAAGTCACTAAATTCATCCAATGATCAGGGCAGTGAATCCAAGTCAGGAAAGAAAAGAAGAAGAGAGTCCAAAGGTTGATCACCACGTCTATTCCAAAAAGCTTGGAGTTGTCTATTCCCGCCTCGATCTGCACTCTACATATTTGCAAATTGTATAAGTTCTTGGCAAACTTGCTGTGGATCTGATGATCTCATTGGCACATTTTCCAGATTGTCATATATTCTTAGTTAGGTAGGTTAGCAGCAATTATAGGAGTATGCTAGTTCTCTTTGTAGTTGTTTGCCGCAATTCATGTCATCTGTGGGAGGTAATAGTAGAGGATCCTTAAGTTAGCTTATGTATTACTTGGGCTTTTCTGAAACAAAGATTGCCTTAATTAGAGAAAGGAAAGCCACAGATTCAGAACAATGGTCTTTTTAGGCCTTTCTGTCTTATCTGCTGTCTTCCCCTTTTAACTCCCTGGGTGATTTTCAGAGTAATTGTTAACTTAACATCCCGTATTTGATTAATGGTTTTGAAAAGCTTAGCCTTATTGGAGCATTTGGCTCCTCGCAAGTTTGGGTCTGTATAGCTTATCAAACTTGCACTTCATTTCTGAGTTCGTTTTTTTCTA 3555 42.19 MASSDKDVEEQLLEAGNKIVDPPTSVEELLPLLDKIESLLAKVEQSPSKSMQTALTPSLKALVSDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAKRASILETVAKVRSCVVMLDLECDGLIIEMFQHFLKTVRDYHPENVFTSMETIMSLVLEESEDMAVGLLSPILESVKKDNEEILPIARKLGEKVLDNCSTKLKPYLVQAVKTLGISFDDYSDVVASICKDLSGSLEPSNLHDAGENVVAESKSVRTSEDEVDEKLTEVATPERVDMAVEKHRDSVKSNGVAEGGEDGSVSTLENKKEEHGQECKEVKSPKSPEPANLSSEKASNVKERSEKSSRKKGKKSNQSSKSTEVSHVDAQKGSESQPERESHSEHPGSPCENRSAENLPLENEADAKPSSPKAMEVESANVASPSLSESVPDECNNKSGQGNKAGQAKKKGNSAKEVVASSAEVSKESSDGMHDSGAKLDSDAEEKAPAGVSDDTKTAAEDSEERESDATSDYETKTLKHSARKGDGASKSSGGSLKQSEAKRKKGSGKSISGKNMKKLSGDDDKKEATPVLKPTSKTTKDEKILDKTPTAVSKRKRTPSKEKESETKKFDETLVGSKIKVWWPEDRMFYAGVVESFDPKRKKHKVLYTDGDEEILYLKKERWEYIDDETESEREEAADLVRSESPAEIPQKKKAKLNANESAKRGKMDVSPKKGGVTSSSKSKVAATKTDRSSGSKVESKSKENTPKVGRPTSVTGSKSKDQSTPKSGSKAGKTGPKISGKSKTDDAESHKTSKSKEDETSTPAVVAKSKQDVSKTGKSKQETPKAPAISKGKSTKTGDKSNSSNLSTKVKFTSSKSKESGDAKNLASSAKTVENSKGKSLNSSNDQGSESKSGKKRRRESKG 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1196230 1211718 + XM_039028646.1 Bhi04g00044 31653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00044 923 MobiDBLite consensus disorder prediction 686 923 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 733 752 - -
Bhi04g00044 923 Pfam Sister chromatid cohesion protein PDS5 protein 28 232 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 296 629 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 270 289 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 296 313 - -
Bhi04g00044 923 SUPERFAMILY Tudor/PWWP/MBT 632 675 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 391 408 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 439 466 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 486 545 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 694 730 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 799 823 - -
Bhi04g00044 923 PANTHER TRANSCRIPTIONAL REGULATOR 2 880 - -
Bhi04g00044 923 CDD TUDOR 635 679 IPR002999 -
Bhi04g00044 923 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 2 880 IPR039776 GO:0007064
Bhi04g00044 923 MobiDBLite consensus disorder prediction 575 629 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 840 909 - -
Bhi04g00044 923 SUPERFAMILY ARM repeat 26 273 IPR016024 -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 323 343 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 766 790 - -
Bhi04g00044 923 MobiDBLite consensus disorder prediction 357 371 - -
Bhi04g00044 923 Gene3D - 619 680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00044 - - - csv:101205018 1403.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00044 Bhi-Chr4:1196230 Bhi08g00078 Bhi-Chr8:3162041 1.67E-38 dispersed
Bhi09g00523 Bhi-Chr9:11058766 Bhi04g00044 Bhi-Chr4:1196230 3.29E-24 dispersed
Bhi04g00044 Bhi-Chr4:1196230 Bhi09g00522 Bhi-Chr9:11057224 5.44E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g511 . . . . . . . . . . . . . . Sed01g1394 . . Bhi04g00044 Tan02g2759 Cmetu12g0413 . Hepe10g0220 . Lcy13g1828 . . . . . . . . . . . . . . . . Blo18g00010 . Bda13g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00044 Bhi_Chr04 FPKM 10.699317 8.411065 17.23967 17.358391 8.773735 10.352633 11.229062 23.162182 21.130432 27.759653