Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00046 ACATCAAATTTCCCTTTTTTTAAAAAAATAAATAATAAATAAAAAACCTTCTTAATTCTTTTTTGCATTTTTTCCATCTTAATAATGATATTCAATGAACATAGTATAACCTATTATAACCTGAACCTCCATTTCTTTATTCTATCTCCATAGAAAGTACTGTTCATGGATTCAAAGGTGGAATGTCTCCAAACAGAGCTTGAAAGGTTGAGAAAAGAGAATGAAGCTCTAAAGTTTATGCTCAGAGTTGTGAGCATCAAGAATTTGGTTTCTCAAACGGATGTTTGTTTAAGAGATCAAAGTGATGGTTTGAACCAAAGTTCGAACACAAGAGCGAGAGCCGATCTCGAAGTTCCACTCGCTCTCGCACTCGGACCTTCGTCCACGACCCAAGCATATGTTAGAACTAGCTTCAAAGACCAAGCATTGATGGTGAAGGATGGATATAGATGGAGAAAATATGGGCAAAAGATTACGAAGGACAATCAATCTCCTCGTGCTTATTTCAAGTGTTCTTCTCCAGGATGCCCAGTCAAAAAAAAGGTACAAAGAAGCTTGGAAGATAAGTCAATGGTCATAGTCACATACGATGGTCACCACAACCATCAAAATGGCTCTCCTTCTCCGCTTTCAACCTCTCGACGACGGTCTTCGTCTCTATCTTCTCCGGCGGCCGTCCGTCGTTTGCCACTTCCACTGCCGCCTTTGTCACCACCGCTTTGGGTGGAGAGCAACCGAGTTGTTCCACCAGTGTCGCTCGATCTCGATCTTACTCTTTCGAGAGACAAAACATATTAAAATAGAAGAAAGTTTCCAATTTAAAAGAACGATGGAGTGGAAAAACTCTTTACATAATTAAAAATTACTTCTAATCTTGGACTAAAAACGACTCTAATGTCGATGAAGAGTTGGGTTTTTTTCTTTTGAGATCCAATTGTAGTGTCAATTTTTTTTTTTTTTCCCATTTTAACTTTTGTCCTTGAAACTTTTAAATATGCTGTCTTTTGTCTCCAAAATTTTGGATCTTTTATCCGACTATGCGTATAATTAAAGTATATAAGCTAATTGCCTAAAAACCAAAAGTAAAAACAAAACAAAAGTATATAAATCTGTGTAGAGTCCAACTGTTCACACCAGATTTCAATCCAAGGGTAAGATATTTAACCCGTAGAAATGAATTTGATTTTATTGATTTAAAATATAAATGTTACATTCTCTATTTTTTATCCTTGGGTTCTTTCTCTCTTTTGAACTTAGTTGATCGATTTGGATCGGTCTCTAGCTTGTTGATGTGTTTGGATCGGTCTCTAGTTTGTTGATGTATTTGATTGACCTCTAGTTTGTTGATACGTTTGGATCGGCTTCTGGTTGTTGATGTGTTGGATTGGTCTCTGGTTTGTTCTGTTTGGATCGGCATGAACTTCTTGATCGATTTGGATCCACCTTTAGCTTGTTGATAGAAATAATTTCATTTGATGAGCAAACATTTTCTCGACGGATCGATGCTTAGACAT 1514 36.66 MDSKVECLQTELERLRKENEALKFMLRVVSIKNLVSQTDVCLRDQSDGLNQSSNTRARADLEVPLALALGPSSTTQAYVRTSFKDQALMVKDGYRWRKYGQKITKDNQSPRAYFKCSSPGCPVKKKVQRSLEDKSMVIVTYDGHHNHQNGSPSPLSTSRRRSSSLSSPAAVRRLPLPLPPLSPPLWVESNRVVPPVSLDLDLTLSRDKTY 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1407714 1409939 + XM_039030251.1 Bhi04g00046 31655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00046 210 SUPERFAMILY WRKY DNA-binding domain 86 148 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi04g00046 210 MobiDBLite consensus disorder prediction 142 169 - -
Bhi04g00046 210 Gene3D WRKY domain 74 150 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi04g00046 210 SMART WRKY_cls 90 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi04g00046 210 Coils Coil 5 25 - -
Bhi04g00046 210 ProSiteProfiles WRKY domain profile. 85 150 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi04g00046 210 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 4 171 IPR044810 GO:0003700
Bhi04g00046 210 Pfam WRKY DNA -binding domain 91 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi04g00046 210 PANTHER WRKY TRANSCRIPTION FACTOR 40-RELATED 4 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00046 - - - csv:101204768 261.922
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00046 Bhi09g03003 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00046 Bhi-Chr4:1407714 Bhi09g03002 Bhi-Chr9:77900817 1.09E-30 dispersed
Bhi04g00045 Bhi-Chr4:1381863 Bhi04g00046 Bhi-Chr4:1407714 5.50E-29 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015541 0 1 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 1 1 0 1 0 1 1 0 0 1 10
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
831 PF03106 WRKY 8.90E-24 CL0274 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00046 Bhi_Chr04 FPKM 1.925839 1.161357 0.13564 0.371167 18.570251 20.498363 17.128937 0.091036 0.038801 0.027253