Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00058 GAGGAGGATGAAACTGCTCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGATAATGCACCTGGGTCTAAGACTTTTGTTCGTGGAGGAACTATCAACCCCAACGAGAAGTTGAAGAGTGAATCTGAGGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGAAAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGCTGAGGGAAAGACGAAATCAAGATCGTGAACATTGGCGGGAGGGACGCCATGGAGAAATCTCAACACCATCTAGTCGATTTGATGAACTGCCTGATGACTTTGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACGACTAACCTTTATGTAGGAAATTTATCTCCACAGGTTGATGAGAATTTTCTTCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTAAAGATAATGTGGCCAAGGACAGAGGAGGAACGAAGACGACAAAGAAATTGTGGATTTGTAGCTTTCATGAATAGAGCTGATGGCCAAGCTGCAAAGGATGAAATGCAGGGAGTTGTTGTTTATGGATATGAACTGAAAATTGGATGGGGAAAGTCTGTTGCTCTTCCATCCCAAGCATTACCTGCACCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGGACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTCACTTCTGTCCCAAATCAAAATTCTGAACTGGTTCTGACACCCAACATTCCTGATATTACCGTTGAACCACCTGAGGATGATCATCTCCACCATGTCATTGACACTATGGCTCTTTATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACTTATTATGTTTGGCGACTTTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAAAAGGAGTCTGGTCCCACTTATGCTGCTGGAAGAAGCAGACGCGTGGAGCTTGAAAGAACATTAACTGATTCGCAAAGGGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAGGTTGCAAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTAAAGAATGCATCTGCATACCGCACGAAATTTGAAGCAACATTACCTGACATCATTGAGAGCTTCAATGATCTATATCGCAGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTACTGAAATTATTGCAAGTTTGGTCCGATTGGTTTCTATTCTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGGTTGGGAAACTCTGGTGTGATCCCTTTTCATTCATTATGTGGTGATGCCCCTGAGATTGAACGGAAGGCCAATTGTGATGATTTAGGAGATGGGAGTAAAATCAATCAAGATGCTGAATTGGCAATGGGCAAAGGAGGAGCCATGAAGGAGTTGATGAATCTTCCCTTTGGAGAATTGGAAAGAAGATGCAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCTCGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCATTCTGGAAGATATTCAAGTAGCTCAAGAGAGACTAAAGCTGAACGAGATCCAGCAGAAATTTCTGGTTGGAACCGTTTTGGGGATAACGAGGCAGATTTCCAAAGAATGGGTTCTGTGCCTATGGCTCAAACTCTTTCCATTCCACAACCTGAACTAAAAGGCTTCACTAAGTCTGGGAAGAATGATCCTGTTTTGCCTGCCTCTAAATGGGCTAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTGCTAGGGGTCTCGGTTTGAGTTATTCATCTTCTGGAAGTGAAAATGCAGGTGATGGTCCTAGTAAAGCTGATGAGATGGAGATTACTACGGAGGCAAGTGTCCTCATGCAACCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGTGTAGAAGTGGCTTTGATTGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGCAGAGGAAATTGAGAGAAAAGTTTTGATATATCGGAAACAACTAGAATCTGAATACGGACTGACAGATTCCAATGAGACTGCATCAAGGAAGAAGAGGAGGGATAGACCCGATGATAGCCATGATTCATCAAGGAAGCTGCACCGTAGCCAGAGCCATAGTGATAGCCCAGTACGAAAGTTATTGAATCGAGACAGAGACAGGGAAAATGACATGGACAGGGAGCGAGACAGATCACGAGACAGAGACCGCGAAAAGAGTGGTAGCAGAGAAAGGGATGATCACGAACGAGATAGAGGTAAAGAAAGAGATAGGGATAGGAGAAAACGAGGAAAATAAGAATTCTTTCGATCAGATTCTGCCAAGCAAAGTGTTCTCGCAATGAAGGGATGTGAGAGTTTTAGCCAGGTCGAGTGTCAGAGAAAAACGTATCTAATTTTGTTGCCAGTTGATGTTTTAAGAAAAACAAGGTATGAATGTTGTGGAGAGAAAGGGAAATGTTGTGTATGGTAAAGATGTTAATTGATAGGAAGTTAATGTGTTCCCCATTGAAATGAAAATTCCCATGATCATGTTTGTACTAAATATGTTACATTTATATCAGAACATTTTCTTTACCATTCCCCCATATCCCCACTTGAAGAGCCGTTTGGTATAAAAGTTCTAAATTTCCTTCA 3091 42.8 MEELKHEQELRERRNQDREHWREGRHGEISTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEDDHLHHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIIESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANCDDLGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSHSGRYSSSSRETKAERDPAEISGWNRFGDNEADFQRMGSVPMAQTLSIPQPELKGFTKSGKNDPVLPASKWAREDDESDNEQKGGARGLGLSYSSSGSENAGDGPSKADEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSAEEIERKVLIYRKQLESEYGLTDSNETASRKKRRDRPDDSHDSSRKLHRSQSHSDSPVRKLLNRDRDRENDMDRERDRSRDRDREKSGSRERDDHERDRGKERDRDRRKRGK 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1669248 1684849 + XM_039028652.1 Bhi04g00058 31667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00058 833 MobiDBLite consensus disorder prediction 633 648 - -
Bhi04g00058 833 Gene3D - 692 743 - -
Bhi04g00058 833 Pfam Surp module 209 260 IPR000061 GO:0003723|GO:0006396
Bhi04g00058 833 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 136 IPR000504 GO:0003723
Bhi04g00058 833 Gene3D - 319 463 IPR008942 -
Bhi04g00058 833 SUPERFAMILY ENTH/VHS domain 320 459 IPR008942 -
Bhi04g00058 833 MobiDBLite consensus disorder prediction 732 833 - -
Bhi04g00058 833 MobiDBLite consensus disorder prediction 746 826 - -
Bhi04g00058 833 SMART 558neu5 325 460 IPR006569 -
Bhi04g00058 833 ProSiteProfiles SURP motif repeat profile. 210 253 IPR000061 GO:0003723|GO:0006396
Bhi04g00058 833 Pfam cwf21 domain 692 739 IPR013170 -
Bhi04g00058 833 SMART rrm1_1 62 138 IPR000504 GO:0003723
Bhi04g00058 833 Gene3D - 1 144 IPR012677 -
Bhi04g00058 833 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 142 IPR000504 GO:0003723
Bhi04g00058 833 SUPERFAMILY RNA-binding domain, RBD 54 152 IPR035979 GO:0003676
Bhi04g00058 833 SMART cwf21_2 692 741 IPR013170 -
Bhi04g00058 833 PANTHER RNA PROCESSING PROTEIN LD23810P 1 828 - -
Bhi04g00058 833 MobiDBLite consensus disorder prediction 617 698 - -
Bhi04g00058 833 Coils Coil 323 343 - -
Bhi04g00058 833 Coils Coil 693 713 - -
Bhi04g00058 833 MobiDBLite consensus disorder prediction 556 592 - -
Bhi04g00058 833 SMART surpneu2 208 262 IPR000061 GO:0003723|GO:0006396
Bhi04g00058 833 MobiDBLite consensus disorder prediction 573 587 - -
Bhi04g00058 833 Pfam CID domain 325 453 IPR006569 -
Bhi04g00058 833 PANTHER - 1 828 - -
Bhi04g00058 833 ProSiteProfiles CID domain profile. 318 463 IPR006569 -
Bhi04g00058 833 CDD RRM_SR140 60 143 IPR035009 -
Bhi04g00058 833 MobiDBLite consensus disorder prediction 1 58 - -
Bhi04g00058 833 Gene3D Surp module 196 265 IPR035967 GO:0003723|GO:0006396
Bhi04g00058 833 SUPERFAMILY Surp module (SWAP domain) 184 265 IPR035967 GO:0003723|GO:0006396
Bhi04g00058 833 MobiDBLite consensus disorder prediction 1 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00058 K12842 SR140; U2-associated protein SR140 - csv:101209274 1480.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00058 Bhi-Chr4:1669248 Bhi12g00462 Bhi-Chr12:14858657 1.02E-08 dispersed
Bhi04g00057 Bhi-Chr4:1668258 Bhi04g00058 Bhi-Chr4:1669248 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00058 Bhi_Chr04 FPKM 0.0 0.0 0.0 0.0 2.40619 2.301628 2.771334 6.257288 6.638949 6.40501