Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00065 CGATCCATGGCAGTGCGATTTTCTTGTTCCAATAATGCCGCTTTCTTCATCTCTTTCTCCCACACAGAGAAGATCATACAATCTCGCGATAGTGGGCGATGGCGAGCGACGAAGAGAGAGCTCTAGAGCACCAGCTGGAGGTTCAATTGCATGAGCAGAGAGAGTCTCTCGCCGCCTTACAGGATGCCCTAGCCTCCGACGCCTCCAATCCCGAGCTTCTCGAGGTTCATGAGGAACTTGTCCAAGCAATTAAAGATGCTGAAGAAGGGCTGCTTCACCTTAAACGTTCTAGGTTATTACGAGAAGCAGATTCGGTGTTGCGTGGTCGTGATAGTAAAGCAGCGGAAGATGTTAAGGTGGAGCCTTTTGATCATACGGATGTCGAACCTGAACCTCCTGAGGATCAGAGTTTCGTTGTTGGATCGAAATGCAGATTCCGGCACACTGATGGTCGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAGTTTCTTTCCTCACTCCTACAACTGAAAATATGTTGATATGCAAGTTCTTCTTACAGCAAAGATGTCGATTTGGCACTAACTGCCGCTTATCGCATGGAGTTGATATCCCTTTAACCTCTCTTAGGAGATACGTGCCAACAATTTGGAATCAGTCACTGGCAGGATCCAGTATCTGGGCTCTCTCATCTAAGAATGACATTTGGAGGCATGCTGAACTTGAATCTTGGGATGATGCGCTTCAAGTTGCACAAGTTGTTTTTAAAGGTGATGGATCCTCTCAAAAGCTTGGACCGGAGGACATAACATTATCGGAGTATGCTCAAATTAATGATGAAGAGGAAAGTGATTCCAGCTTGGAGCAGTCTGACTCAAGTGATTATGAAGAGGATGATTTGCAGGGTTTGGGATTTCTTGAAAGCTCTACTCAGCAGAGGGGCATCCAGACAGAGACCACCATATTTGCTAAATGGGAGAACCATACCCGAGGAATTGCTTCCAAGATGATGGCTAATATGGGCTACTGCGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATTCCCGTCAAAGTTCTTCCAGCAAAGCAATCTCTTGATCATGCTCTAGAGTCACAAAAGGAGAATAATACTAATGACGAGAATAATGGTAAGAAACGAAGTAGAGGCGGTAAGAGGAAGCGTGAGAAGAAGTTCGCTGCAGCGACACGGGCAGCTAAAGAGGAAGAAGAGTCGAGACCTGATGTCTTTAATCTTATCAATAACCACCTTGCAATGCATAATGGAGCACTGAATGGTGGATCCGTGAAGAAACAGAAAGATAAAGGTTCAGCAGATGGGAAGAAGGTGGATAGGCGAACCCTAATTGCGTTTGATGATGAGGTGAAAGACTTGCGAATACGAATAGAGAAGCTTGAAGAAATGGTGAACAGAAATAAGAAAGAGAAGGTTGTTTATGAGGCTGCCTTAAGAAAGCTGAATGAGACCCGGAAAGCTCTGGCCGAGGTCGAGGCAGCTCATGCGTCTGCATCAAATGCAGTTACCAGTAGAGAAAAGGAAAAAAGATGGCTGAAGTTTTAGAGTCTGACTTGATGTTATTGTATAATGATAGCTCCACCTGTAGAAGTTTCATTTCATTCTTCTGAAACCAAACTCCACAGTGAATTATCGAAGTGAATTGTGCGACTCAACTTGTATTCCATGATGGCTTGCCGTTGGTGTATTTTCATCCGGGGCTCAAACTATAAGATTTTCAACCCTCCCCCATCTAATGTGATTTTTGTGGGAATATCACAATGTTGTTAGATTGTATTTTGGCAGGTATAATCCATGGAATGGATTCATATAAACAGGGACAACGACCTATTTTGTTTTTCTGATAATTTAATTCTAAATCATGATATAGGTGTCAGGCTGATTATGGTTCA 1939 43.84 MASDEERALEHQLEVQLHEQRESLAALQDALASDASNPELLEVHEELVQAIKDAEEGLLHLKRSRLLREADSVLRGRDSKAAEDVKVEPFDHTDVEPEPPEDQSFVVGSKCRFRHTDGRWYDGEIVGLDGSNSAKVSFLTPTTENMLICKFFLQQRCRFGTNCRLSHGVDIPLTSLRRYVPTIWNQSLAGSSIWALSSKNDIWRHAELESWDDALQVAQVVFKGDGSSQKLGPEDITLSEYAQINDEEESDSSLEQSDSSDYEEDDLQGLGFLESSTQQRGIQTETTIFAKWENHTRGIASKMMANMGYCEGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNTNDENNGKKRSRGGKRKREKKFAAATRAAKEEEESRPDVFNLINNHLAMHNGALNGGSVKKQKDKGSADGKKVDRRTLIAFDDEVKDLRIRIEKLEEMVNRNKKEKVVYEAALRKLNETRKALAEVEAAHASASNAVTSREKEKRWLKF 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1777797 1781244 + XM_039030329.1 Bhi04g00065 31674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00065 497 Pfam CCCH-type zinc finger 148 168 IPR041367 -
Bhi04g00065 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 497 - -
Bhi04g00065 497 SUPERFAMILY CCCH zinc finger 144 168 IPR036855 GO:0046872
Bhi04g00065 497 ProSiteProfiles Zinc finger C3H1-type profile. 143 170 IPR000571 GO:0046872
Bhi04g00065 497 CDD TUDOR 108 139 IPR002999 -
Bhi04g00065 497 ProSiteProfiles G-patch domain profile. 296 342 IPR000467 GO:0003676
Bhi04g00065 497 SMART c3hfinal6 143 169 IPR000571 GO:0046872
Bhi04g00065 497 MobiDBLite consensus disorder prediction 342 358 - -
Bhi04g00065 497 SMART G-patch_5 294 340 IPR000467 GO:0003676
Bhi04g00065 497 MobiDBLite consensus disorder prediction 245 265 - -
Bhi04g00065 497 Gene3D - 104 180 - -
Bhi04g00065 497 Pfam G-patch domain 296 338 IPR000467 GO:0003676
Bhi04g00065 497 Coils Coil 426 484 - -
Bhi04g00065 497 MobiDBLite consensus disorder prediction 476 497 - -
Bhi04g00065 497 Coils Coil 10 30 - -
Bhi04g00065 497 MobiDBLite consensus disorder prediction 400 419 - -
Bhi04g00065 497 MobiDBLite consensus disorder prediction 342 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00065 - - - csv:101208787 835.484
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010406 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
832 PF01585 G-patch 1.30E-11 CL0449 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00065 Bhi_Chr04 FPKM 22.816223 26.462549 30.586525 30.291267 18.389175 20.44442 16.942089 23.74054 22.226366 19.349117