Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00082 ATGGGGAAACATAAGGGTTTGAGAGATGGTTTTAGGGTGTTGGTGCTCGTTGTCCTCCTTAATATATTACTGGCTGTGGCGATGGCAGAAAAGGAGGAGGCGACAGCGGCAACAGCGAAAGTGAAGGTAGGTGTGGTTTTGGATTTTAATTTTACTTTTGGAAAGATGGGTCTGAGTTGTATTTCAATGGCTCTCGTTGATTTCTATTCTTCTCGGAGTCATTACAAGACAAGAGTAATTCTCAACACCATTGACTCAAATGGCACAGTTGTTGGTGCAGCTGTCGCAGCTTTAGATTTGATAAAGAAAGAGGAAGTACAAAGCATTATAGGTCCAACAACTTCGATGCAAGCAAGTTTCATAATCGACGTTGGAGACAAAGCACAAGTTCCGATCATCTCATTTTCAGCGACACGACCTTCTCTCACATCCCATCGCAGCTCTTTCTTCTTTCGAGTTGCCCAAGCTGATTCCTTTCAGGTGAAAGCCATTGCAGCAATCATAAAGACCTTTAAATGGCGACAAGTTGTCCCAATCTACGTCGATGACGAGTTTGGCGACGGTATCATCCCTTACCTTGTCGGTGCTCTACAAGATGTAGATGCAAACGTGCCATACCAAAGCCTCATCTCTCCCACCGCCACTGATGACGAGATCGACCTGAAACTTTCCAATTTAATGACAATGCAAACTAGAGTGTTTGTGGTGCACATGTTACCTGACCTTGCTTCAAGACTCTTCACCATGGCGAGAAAGAAGGGAATGATGGGTCGAGGCTACGTTTGGATAATGATGAATGCTATCACAAATGAGTTTGATTCAATAGAACCCTCAATTCTTGATCAATCAATGCAAGGAGTTTTGGGATTAAGAACTTATGTCCCAAGAATCAAACGCCTTGAATCCTTTAAACGTAGTTGGCAGAGGAGATTTTTAAGCTACTATCCAACCATAGAGGAAATTCCTGAGCTGAATGTGTTTGGGTTATGGGCTTATGATGCAGCTTGGGCACTAGCCATCGCGGTTGAGAAGGCCGGTATCGACAATCTTCGATATAGCAAGCCCAATAATATTACTTTTACGAACATGAAAATGAAGTGTCCATCAAACTATCTCCACAACCTCGGCGTCAATCAAAATGGCGCCAAGTTGCGAGATGCATTGTCAAATGTTAGGTTTAGAGGGTTAGCTGGTGAGTTCAATCTCGTCAATGGCCAATTACAATCTTTCGTATTCGAGATAATGAACGTGGTTGGTAACAATAAAAGGAACGTCGGGTTTTGGTCGCCAAAAACTGGGCTGACGACGAATCTACGGTACTCAAATGGATTGAGACCGATCATCTGGCCAGGAGATATAGAGAAAGCGCCGAAAGGGTGGGAGATTCCGACGAGTGGGAAGAAATTAAGAGTTGGGGTTCCAGTAAAGGATGGATTTTGGGAGTTTGTAAATGTGATTCGTGATCCAAAAACAAATGCAACAATTGATGTAGAAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAAGCTTTACCTTATGCTATTACTTATGAGTTTATTCCTACTGACAAATCTAATGCACACCCTGGTGGTAGTTACAATGACTTGACTCATCAGCTCTTCCTTGGGAAGTTTGATGCTATTGTGGGTGACATAACGATCCGAGCCAATAGGTCTGAGTACATAGACTATACATTGCCATTCACAGAATCCGGCGTAGCCACGGTCGTGCCGATGAAGAGAAACAAGAACACCAATGCGTGGGTTTTCTTGAAGCCTCTTACTTGGAAGTTATGGGCTCTTATAGGTAGCTCCTTTGTGTTCGTGGCCGTTATTATTTGGATACTTGAACATCGAGTCAACGAGGACTTTCATGGACGTGTTCTTGATCAAATTTGTAACAGCCTTTGGTACTCTTTTTCCACTATGGTTTTCGCCCATCGAGAGCGTACATACAATAATTGGACCAAATTTGTGGTGATAATATGGTTGTTTGTGGTTCTCATCATTACACAAAGTTACACTGCAAGTTTGGCTTCACTTTTGACGGTTCAAGAGCTCAAACCCACGGTAACTGATATCAATCAGCTTCTTAAAAATGGAGAGAATGTTGGGTATCAAGGAGGTTCTTTCGTGTACGAGATTCTTAAGTCGTTGAAGTTCCATGATTTCCAACTAAAAACTTATCAATCTGCAGAACAAATGCATGAACTTTTTCTCAAAGGAAGCAACAATGGAGGAATTTCTGCGGCTGTGGATGAAATCCCTTATATTAAGTTGTTTCTTGCCAAATATTGCTCTCAATATACTATTACAGAACCCACCTACAAAGCCGATGGATTTGGTTTTGGTTTTCCGATAGGATCGCCGTTAGTACCTGATATTTCAAGAGCCATTTTGAAGGTAACAGAGGACGATAGAATAAGGGAAATCGAAAACACATGGTTCAAGAAGGTGAAAGAATGTTCGAGTTCGGAAGCTGCTGAATTATCTTCCACCCGTCTCACTATCGACAGTTTTTGGGTACTTTTTGCCATCACTGCCAGTGTCTCCATAATTTCTGTGGTAGTTTACATTGTCTTTTTTCTCTATGAAGAATTGCCGCAGTCTTGGAGAGTAGCTAATTCTTCCATCTTGAAAACATTAGCGGACTTGGGTTCCAAGTTCTTGGGTACAGATCCCAAAGCTCTAGCTCTTCAAGAAAGTCGTCAACGACGAGATTGA 2727 42.17 MGKHKGLRDGFRVLVLVVLLNILLAVAMAEKEEATAATAKVKVGVVLDFNFTFGKMGLSCISMALVDFYSSRSHYKTRVILNTIDSNGTVVGAAVAALDLIKKEEVQSIIGPTTSMQASFIIDVGDKAQVPIISFSATRPSLTSHRSSFFFRVAQADSFQVKAIAAIIKTFKWRQVVPIYVDDEFGDGIIPYLVGALQDVDANVPYQSLISPTATDDEIDLKLSNLMTMQTRVFVVHMLPDLASRLFTMARKKGMMGRGYVWIMMNAITNEFDSIEPSILDQSMQGVLGLRTYVPRIKRLESFKRSWQRRFLSYYPTIEEIPELNVFGLWAYDAAWALAIAVEKAGIDNLRYSKPNNITFTNMKMKCPSNYLHNLGVNQNGAKLRDALSNVRFRGLAGEFNLVNGQLQSFVFEIMNVVGNNKRNVGFWSPKTGLTTNLRYSNGLRPIIWPGDIEKAPKGWEIPTSGKKLRVGVPVKDGFWEFVNVIRDPKTNATIDVEGYCIDVFKAVIEALPYAITYEFIPTDKSNAHPGGSYNDLTHQLFLGKFDAIVGDITIRANRSEYIDYTLPFTESGVATVVPMKRNKNTNAWVFLKPLTWKLWALIGSSFVFVAVIIWILEHRVNEDFHGRVLDQICNSLWYSFSTMVFAHRERTYNNWTKFVVIIWLFVVLIITQSYTASLASLLTVQELKPTVTDINQLLKNGENVGYQGGSFVYEILKSLKFHDFQLKTYQSAEQMHELFLKGSNNGGISAAVDEIPYIKLFLAKYCSQYTITEPTYKADGFGFGFPIGSPLVPDISRAILKVTEDDRIREIENTWFKKVKECSSSEAAELSSTRLTIDSFWVLFAITASVSIISVVVYIVFFLYEELPQSWRVANSSILKTLADLGSKFLGTDPKALALQESRQRRD 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2154188 2160567 - XM_039028880.1 Bhi04g00082 31691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00082 908 CDD GluR_Plant 467 817 - -
Bhi04g00082 908 Pfam Receptor family ligand binding region 61 419 IPR001828 -
Bhi04g00082 908 SMART GluR_14 468 819 IPR001320 GO:0015276|GO:0016020
Bhi04g00082 908 Pfam Ligand-gated ion channel 819 849 IPR001320 GO:0015276|GO:0016020
Bhi04g00082 908 CDD PBP1_GABAb_receptor_plant 42 438 IPR044440 -
Bhi04g00082 908 PANTHER GLUTAMATE RECEPTOR 2.9 41 881 - -
Bhi04g00082 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 881 - -
Bhi04g00082 908 SUPERFAMILY Periplasmic binding protein-like I 35 451 IPR028082 -
Bhi04g00082 908 Gene3D - 478 587 - -
Bhi04g00082 908 Gene3D - 381 472 - -
Bhi04g00082 908 PIRSF IGluLR_plant 10 906 IPR017103 -
Bhi04g00082 908 Gene3D - 764 825 - -
Bhi04g00082 908 Pfam Bacterial extracellular solute-binding proteins, family 3 497 818 IPR001638 -
Bhi04g00082 908 Gene3D - 158 326 - -
Bhi04g00082 908 PRINTS Metabotropic glutamate GPCR signature 109 135 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bhi04g00082 908 PRINTS Metabotropic glutamate GPCR signature 141 160 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bhi04g00082 908 PRINTS Metabotropic glutamate GPCR signature 160 176 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bhi04g00082 908 PRINTS Metabotropic glutamate GPCR signature 826 847 IPR000337 GO:0004930|GO:0007186|GO:0016021
Bhi04g00082 908 Gene3D - 588 733 - -
Bhi04g00082 908 SUPERFAMILY Periplasmic binding protein-like II 447 818 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00082 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203550 1420.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00082 Bhi-Chr4:2154188 Bhi04g01540 Bhi-Chr4:38716587 0 dispersed
Bhi09g03484 Bhi-Chr9:87950785 Bhi04g00082 Bhi-Chr4:2154188 1.06E-139 dispersed
Bhi04g00081 Bhi-Chr4:2131784 Bhi04g00082 Bhi-Chr4:2154188 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00082 Bhi_Chr04 FPKM 22.811785 26.120363 27.828506 28.18211 26.690956 25.789698 29.894018 55.236057 57.130116 58.369724