Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bhi04g00088 | GCAGAGTTGATGAATCTTCTTCCTCAGCATCGCTCCTTCTTCAATTTGTTCTTGCGGTGTACCCATCAGAAAGATCTTCAGAAGGGCAAAGCCATTCACGCTCAACTCCTCAGAACTGGTTCGTTCTCTTCAGTTTACTTAACCAACAGTCTTGTTAACTTGTATGCAAAATGCGGATGCCTTGTTAAGGCCAAGCTCGTCTTTGAGAGTATAAGCAACAAAGACGTCGTCTCATGGAATTGCCTCATCAATGGCCACTCTCAACAGGGTCCCGTTTGTTCTTCGTTTGTGATGGAGCTTTTTCAGAGAATGAGAACGGAGAACACTCTGCCCAATGCCCATACTTTTGCTGGGGTTTTCACTGCTGCTTCAACTTCACTCGAAACTTTCGGTGGTCTACAGGCCCATGCGCTTGCGATCAAAACTTCTAGCTTTTATGATGTTTTTGTTGGCAGTTCGCTTCTCAATATGTATTGCAAAATTGGGTGTCTGCTGGAGGCTCGTAAGGTGTTCGACAGAATTCCTGAAAGGAATTCTGTTTCTTGGGCTACTATGATTTCAGGGTATGCGATGGAAAGGATGGCTTTTGAGGCTTGGGAGCTGTTTTTATTGATGCGTCGTGAAGAGGGGATCCATAATGAGTTTACCTATACCGGTGTGCTTAGTGCATTGACGGTTCCTGAACTTGTTCACTATGGTAAGCAAATTCATTGTCTTGCCCTTAAAAGTGGGTTGTTATCAATTGTTTCTGTAGGGAATGCTCTTGTTACGATGTATTGTAAATGTGGATGTTTAGATGATGCGCTTAAAACATTTGAGTTGTCTGGTGATAAGAACTCTATTACATGGTCAGCTATGATAACTGGCTATGCACAAGCTGGGGACTCGCACGAGGCTTTAAAGTTGTTTTCTTATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACATTGGTGCTCTGAAAGAGGGGAAACAAATGCATGGATATTCCTTGAAGGTGGGATATGAATCTCAGATATATATCATGACAGCTTTGGTTGATATGTATGCAAAATGTGGAAGCCTAGTTGATGCCCGAAAGGGGTTTGATTATTTAAAAGAACCGGATATTGTTTTGTGGACTTCCATGATCGGAGGATATGCTCAAAATGGTGAAAATGAAACTGCTCTGACTCTATACTGTAGAATGCAGATGGAAGGGATTCTGCCCAATGAGCTTACCATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCGGACAATTAAATATGGATTCAATCTTGAAGTTCCAATAGGTAGTGCTCTTTCTACCATGTATGCAAAGTGTGGTAGTTTAGAAGACGGGAACCTGGTATTTAGGAGGATGCCTACTCGAGATATTGTGTCATGGAATGCGATGATATCCGGTCTTTCTCAAAATGGCGAGGGTTTGAAAGCTCTTGAACTCTTTGAAGAGATGCGGCAAGGCACTACAAAACCCGATTATGTTACTTTTGTGAATGTTCTTTCTGCGTGCAGCCACATGGGATTGGTGGAAAGAGGTAAGATCTATTTCAAGATGATGCTCGATGAGTTTGGCATTGTTCCAAGAGTAGAGCATTATGCTTGCATGGTAGATATTTTGAGTCGTGCAGGTAAGCTAGAGGAAGCCAAAGAGTTCATAGAATCTGCCACTATTGATCATGGTATGTGTTTATGGCGTATCTTATTAGGAGCCTGTCGAAACTATCGTAATTACGAATTGGGAGCATATGCAGGGGAGAAACTAATGGAGTTAGGTTCAGAAGAATCATCTGCTTATGTATTATTGTCTAGCATTTATGTTGCACTGGGAAGGTCTGATGATGTCGAACGGGTGAGAAGGGTGATGAAACTTCGAGGGGTGAATAAGGAACCAGGTTGTAGTTGGATTGAATTGAAAAGTCAGGTTCATGTGTTTGTAGTTGGTGACCAAATACATCCACAAATTGTCTACATACGTTCAGAGTTAAGAATGTTGAGAAAACATATGAAGGATGAATGTTATGAATCGCCCGAAGATATCGATTCTATGACATTTTACATATAAGATTACCAATTCAATAATAGATATAGCCAAAGCAAAAGCACAACCAGCCCTGAAACAAACAAAGTATCTGATATCCCAGCATGTTCCCTCCTCCTCAACCCATTACAAAGTCTGAATTCTTGTCATTTAGAGATCTGACATGAACATATATTTTATTACAGAGCAACTTCATTTAACCCTATTCACTGCTTCTCCTGTAAAGTATTGACTGTTACTTTCTTCACAAGGAAAGCTCATAAACCTTTTAACTTTGCCTGCAGAAAATCTACAACATTTGCAATATTTTCTGCCAC | 2426 | 40.93 | MNLLPQHRSFFNLFLRCTHQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGCLVKAKLVFESISNKDVVSWNCLINGHSQQGPVCSSFVMELFQRMRTENTLPNAHTFAGVFTAASTSLETFGGLQAHALAIKTSSFYDVFVGSSLLNMYCKIGCLLEARKVFDRIPERNSVSWATMISGYAMERMAFEAWELFLLMRREEGIHNEFTYTGVLSALTVPELVHYGKQIHCLALKSGLLSIVSVGNALVTMYCKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGDSHEALKLFSYMHFNGNKPSEFTFVGVINACSDIGALKEGKQMHGYSLKVGYESQIYIMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMIGGYAQNGENETALTLYCRMQMEGILPNELTMASVLRACSSLAALEQGKQIHARTIKYGFNLEVPIGSALSTMYAKCGSLEDGNLVFRRMPTRDIVSWNAMISGLSQNGEGLKALELFEEMRQGTTKPDYVTFVNVLSACSHMGLVERGKIYFKMMLDEFGIVPRVEHYACMVDILSRAGKLEEAKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSEESSAYVLLSSIYVALGRSDDVERVRRVMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVYIRSELRMLRKHMKDECYESPEDIDSMTFYI | 707 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2319736 | 2322585 | - | XM_039028839.1 | Bhi04g00088 | 31697 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bhi04g00088 | 707 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 360 | 694 | - | - | |
| Bhi04g00088 | 707 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 96 | 220 | - | - | |
| Bhi04g00088 | 707 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 230 | 326 | - | - | |
| Bhi04g00088 | 707 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 309 | 368 | - | - | |
| Bhi04g00088 | 707 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 23 | 122 | - | - | |
| Bhi04g00088 | 707 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 209 | 272 | - | - | |
| Bhi04g00088 | 707 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 96 | 220 | - | - | |
| Bhi04g00088 | 707 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 209 | 272 | - | - | |
| Bhi04g00088 | 707 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 23 | 122 | - | - | |
| Bhi04g00088 | 707 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 309 | 368 | - | - | |
| Bhi04g00088 | 707 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 360 | 694 | - | - | |
| Bhi04g00088 | 707 | PANTHER | PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN | 230 | 326 | - | - | |
| Bhi04g00088 | 707 | Gene3D | Tetratricopeptide repeat domain | 131 | 228 | IPR011990 | GO:0005515 | |
| Bhi04g00088 | 707 | Gene3D | Tetratricopeptide repeat domain | 4 | 127 | IPR011990 | GO:0005515 | |
| Bhi04g00088 | 707 | Gene3D | Tetratricopeptide repeat domain | 231 | 335 | IPR011990 | GO:0005515 | |
| Bhi04g00088 | 707 | Gene3D | Tetratricopeptide repeat domain | 336 | 438 | IPR011990 | GO:0005515 | |
| Bhi04g00088 | 707 | Pfam | PPR repeat | 250 | 270 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat | 177 | 205 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat | 553 | 574 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat | 46 | 70 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat | 149 | 175 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat | 74 | 102 | IPR002885 | - | |
| Bhi04g00088 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 379 | 413 | IPR002885 | - | |
| Bhi04g00088 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 278 | 311 | IPR002885 | - | |
| Bhi04g00088 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 480 | 507 | IPR002885 | - | |
| Bhi04g00088 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 177 | 207 | IPR002885 | - | |
| Bhi04g00088 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 377 | 411 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat family | 376 | 424 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat family | 275 | 322 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | PPR repeat family | 478 | 525 | IPR002885 | - | |
| Bhi04g00088 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 478 | 512 | IPR002885 | - | |
| Bhi04g00088 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 72 | 108 | IPR002885 | - | |
| Bhi04g00088 | 707 | Gene3D | Tetratricopeptide repeat domain | 456 | 676 | IPR011990 | GO:0005515 | |
| Bhi04g00088 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | IPR002885 | - | |
| Bhi04g00088 | 707 | Pfam | E motif | 595 | 657 | IPR046848 | - | |
| Bhi04g00088 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 175 | 205 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bhi04g00088 | - | - | - | csv:101213039 | 1276.92 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bhi04g00088 | Bhi-Chr4:2319736 | Bhi09g01089 | Bhi-Chr9:25315761 | 1.94E-50 | dispersed | |
| Bhi04g00087 | Bhi-Chr4:2319633 | Bhi04g00088 | Bhi-Chr4:2319736 | 0 | tandem |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g143 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bhi04g00088 | . | . | . | . | . | . | Cla08g01390 | . | . | . | . | . | . | . | . | . | . | . | . | . | Cme03g01545 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi08g01280 | . | Chy03g01053 | . | |
| Vvi18g1171 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cpe06g00053 | Cpe13g00653 | Bhi04g00088 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone20ag0415 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012001 | 0 | 2 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 0 | 0 | 1 | 25 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bhi04g00088 | Bhi_Chr04 | FPKM | 2.535374 | 2.124661 | 2.990487 | 2.393703 | 8.914699 | 8.042965 | 7.927129 | 5.239411 | 5.886352 | 5.551949 |