Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00091 TTGATTGTTAGTTTTGGGCCGAAATTGAGAAAACCGAATCAACAGACGTTTAATCAATGATTCATAAACGTCGTAGAGTCAATCAAAATTCTCGCCGGTTAAATGTCAAAAACCTCCATTAGTCCATTGTCGCCGTCGTCGTTTGTAGTATCTCCCAGGAAGTGCCATCAAAATTGACAATGGAGGAAGCCGGTCCCAAACCCAAGAAGGCCGTCTCTTCTCTTTGCTGCTTATGCAACAACAGGAAAGCTGCTCTCAAGAGGCCCAAAACCCTGCAACAGATATGTAGAGAATGTTTCTATGAGGTTTTTGAGGAAGAGATCCATCAAGTTATTGTGAAGAATCAGCTGTTCAGACCTGGGGAACGCATTGCTGTTGGTGCATCTGGTGGAAAAGATTCTACCGTTCTTGCTTATGTGTTATCAGAATTGAATCAGCGGCACAATTATGGTTTAGATCTTTTTCTCTTATCAGTAGATGAGGGCATCACCGGATACAGAGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGTACGGATTGCCACTACAAATTGTATCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAAGATGATTGGTTTAAAGAATAATTGTACCTTTTGTGGAGTTTTCCGTCGACAGGCTCTTGATAGAGGTGCTGCATTGTTGAAAGTAGACAAACTTGCCACGGGGCATAATGCAGATGACATGGCTGAAACAGTTTTATTAAATATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTGCAATAATAACAGGTGAAGATGGACCAATCCCAAGATGCAAACCTTTCAAGTATACATATGAAAAGGAGATAGTAATGTATGCCTATTTTAAGAAGCTGGACTACTTCTCCACCGAGTGCATTTATTCTCCAAATGCATATCGTGGTTTTGCTCGCGAATTTATCAAAGATTTGGAACGAATCAGACCTAGGGCCATCCTTGACATAATTAAATCCGGTGAGGATTTCAGGATTTCCACTTCAACAAAAATGCCTGAGCAAGGGATGTGTGAACGATGCGGCTACATTTCAAGCCAGAAATGGTGTAAAGCTTGTGTTCTGCTCGAGGGCCTAAACCGAGGTTTGCCAAAGTTGGGTATTGGGCGCAGTCGAGGGCATGATAGCGAGGGGAAGAGGGAAACGAATGGAAGTAGTAATGGACATAAAAGAAGCATTGAGAGCAAACAGTGTGGAACTCTCGACTTCTGAAGCATTTTTGTATGATGGCCAAGGAATAATCTTAACAAGAATCAGCATGCGCTAAGACATTCTTCATTGTTTGTGATTGAAGAAACAAGGCAAATGGAGAAAAAGGAATAGTTCAGCATTCAACATATCTGATTCGACACCAGCAATACAAACAATGAAGTCCATTGGGAAACTATGGGCATCCATGTAGCAATTTTATTCCTCCCCCCCCCCAGAAATCTCATTGTATAACATAAATTTAGGATCTATTTTTTAGAAGGTTATACTTTTTGGTTTTTAAAGTTTAATATTAAAGTCGATATTTTAAAAGTCAGACGGAGTGCTAGGGCTGACATTACATTTTAACTTTAATTTACATAAAGTAAAATGTTTTAGTTGTA 1636 39.49 MEEAGPKPKKAVSSLCCLCNNRKAALKRPKTLQQICRECFYEVFEEEIHQVIVKNQLFRPGERIAVGASGGKDSTVLAYVLSELNQRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGEDFRISTSTKMPEQGMCERCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGHDSEGKRETNGSSNGHKRSIESKQCGTLDF 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2422502 2427556 - XM_039030487.1 Bhi04g00091 31700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00091 358 CDD Alpha_ANH_like_II 63 249 - -
Bhi04g00091 358 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 279 - -
Bhi04g00091 358 Pfam PP-loop family 64 251 IPR011063 -
Bhi04g00091 358 Pfam Zinc-ribbon 292 321 IPR032442 -
Bhi04g00091 358 MobiDBLite consensus disorder prediction 324 342 - -
Bhi04g00091 358 MobiDBLite consensus disorder prediction 324 358 - -
Bhi04g00091 358 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 14 326 IPR000541 GO:0000049|GO:0002098|GO:0034227
Bhi04g00091 358 Gene3D HUPs 15 331 IPR014729 -
Bhi04g00091 358 TIGRFAM TIGR00269: TIGR00269 family protein 213 313 IPR000541 GO:0000049|GO:0002098|GO:0034227
Bhi04g00091 358 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 15 342 IPR000541 GO:0000049|GO:0002098|GO:0034227
Bhi04g00091 358 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 15 342 - -
Bhi04g00091 358 PIRSF ATPase_YdaO 12 323 IPR035107 GO:0008033
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00091 K14168 CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-] - csv:101212318 710.679
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013567 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00091 Bhi_Chr04 FPKM 3.465559 4.652758 3.595758 3.062297 5.576148 5.520499 6.006987 30.182238 28.763367 32.65345