Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00092 ATGAATGCGGCTGAGAATGGTGGTTACATACAGAGCTTGCAAATGGCTCCGGGGATCAAAGGGAAGAAAATCACTTGGATAAATAAAAATGGAATATTGGGTTTTGTTGAATCCATTATTTTGAGCCAAAAAGAAGCCAGTGAACCCTTTTACATCCTTGACCTAGGACTCCTCATCAATCTTGTTCACAAATGGGCTCATGATCTTCCAATGATTCAGCCATATTATGCTGTCAAGTGCAACCCTAACATTGAATTTCTTGGTGCCATGGCTGCCCTCGGCTTTAGCTTCGACTGCGCCAGCCGAGCCGAGATTGAAACCGTTATGGCTCTTGGTGTGTCATCCGATCGAATCATCTTTGCCAACCCATGCAAGGCGGAGTCCCACATCAAGTATGCCGCTAGCGTTGGCGTTAATTTGACGACCTTCGACTCTATAAATGAAGTAAGAAAGATCAAAAGAAGTCATCCAGAATGTGCATTGTTGATCCGAATCAAAGTCATGGACGATAGTACATTTCGGAGTCCATTGAGCTCTAAGTATGGTGCACTCCCGAATGAGATAGAGTCGCTCCTACAAGCTGCTCAAGCTGCGCAACTCGACGTTATTGGTGTTTCGTTCCATATTGGAAGTGGAGGTAACGATGTTTATGCTTATCGCTATGCCATAGCTGCCGCCAAAGAAGTGTTTGACACAACAGTTCAATTAGGGATGCCAAAAATGAAGGTGCTCAATATCGGAGGTGGGTTCACGGCCGACACACATTTCAATGTGGCCGTCATGGCGATTAAAGAAGGAATCTCGAAGCACTTCTCGGAGGAAGAAGGGTTGATTTTCATGGCGGAGCCGGGGAGATATTTTGCCGAAAAATGCTTTACATTGGCGACGAACATAATCGGAAAGCGAGTGAGGGGAGATTTGAGAGAGTATTGGATAACTGATGGTATTTATGGGTCAATGAATTGCATTGTCAACGATCATGCGGTTGTCACTTGCTCCCCATTAGGCACCACGTCAAACCCTATAAATCCGACGTGTACAAATGCTGAGCTGTACAAATCGACTGTGTTTGGCCCCACATGCGATGCTTATGATACAATTTCCACTAGTTACTGGCTACCGGATTTGGAGGTGGATGATTGGTTGTTGTTTCCTAACATGGGTGCCTACACGTCAGCAACTGGATCCAACTTCAATGGGTTTACCACCTCCTCCATACCGACCATTCTTTATTACTCCAATATTTCTTGCGTAAATTTCTAG 1263 44.97 MNAAENGGYIQSLQMAPGIKGKKITWINKNGILGFVESIILSQKEASEPFYILDLGLLINLVHKWAHDLPMIQPYYAVKCNPNIEFLGAMAALGFSFDCASRAEIETVMALGVSSDRIIFANPCKAESHIKYAASVGVNLTTFDSINEVRKIKRSHPECALLIRIKVMDDSTFRSPLSSKYGALPNEIESLLQAAQAAQLDVIGVSFHIGSGGNDVYAYRYAIAAAKEVFDTTVQLGMPKMKVLNIGGGFTADTHFNVAVMAIKEGISKHFSEEEGLIFMAEPGRYFAEKCFTLATNIIGKRVRGDLREYWITDGIYGSMNCIVNDHAVVTCSPLGTTSNPINPTCTNAELYKSTVFGPTCDAYDTISTSYWLPDLEVDDWLLFPNMGAYTSATGSNFNGFTTSSIPTILYYSNISCVNF 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2455704 2457103 + XM_039028889.1 Bhi04g00092 31701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00092 420 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 289 388 IPR022643 GO:0003824
Bhi04g00092 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 76 94 IPR000183 GO:0003824
Bhi04g00092 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 96 108 IPR000183 GO:0003824
Bhi04g00092 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 199 212 IPR000183 GO:0003824
Bhi04g00092 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 279 298 IPR000183 GO:0003824
Bhi04g00092 420 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 388 401 IPR000183 GO:0003824
Bhi04g00092 420 SUPERFAMILY Alanine racemase C-terminal domain-like 279 406 IPR009006 GO:0003824
Bhi04g00092 420 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 59 288 IPR022644 GO:0003824
Bhi04g00092 420 SUPERFAMILY PLP-binding barrel 48 290 IPR029066 -
Bhi04g00092 420 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 26 413 IPR002433 GO:0006596
Bhi04g00092 420 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 45 406 IPR009006 GO:0003824
Bhi04g00092 420 CDD PLPDE_III_ODC 48 412 - -
Bhi04g00092 420 Gene3D Alanine racemase 58 287 IPR029066 -
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 48 72 IPR002433 GO:0006596
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 74 101 IPR002433 GO:0006596
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 118 142 IPR002433 GO:0006596
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 148 170 IPR002433 GO:0006596
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 314 327 IPR002433 GO:0006596
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 355 365 IPR002433 GO:0006596
Bhi04g00092 420 PRINTS Ornithine decarboxylase signature 375 388 IPR002433 GO:0006596
Bhi04g00092 420 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 237 251 IPR022657 -
Bhi04g00092 420 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 76 94 IPR022653 -
Bhi04g00092 420 PANTHER ORNITHINE DECARBOXYLASE-LIKE 26 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00092 K01581 E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase [EC:4.1.1.17] - jre:108981013 541.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00092 Bhi-Chr4:2455704 Bhi10g01983 Bhi-Chr10:49530406 2.35E-13 dispersed
Bhi04g00092 Bhi-Chr4:2455704 Bhi04g00093 Bhi-Chr4:2506000 5.40E-178 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003217 0 2 0 0 0 3 1 3 2 1 2 2 2 1 1 2 2 1 2 3 1 1 2 2 1 3 4 2 1 3 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00092 Bhi_Chr04 FPKM 3.178261 2.59585 1.611421 2.005845 20.806911 19.54637 20.46771 2.84916 2.850123 2.643192