Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00123 AGGCATTTAGGTTTTCCGAATTGCTGCCTCATCAAGAAGTTCTTCGTTCTCCGCTAGGGTTTTCATCGCGATCTCGTTTCGTCTTTGTTTTTTCGCAAATCCCAACTTCTTCTCTGTTTTTTCTTTCAAATCTTTGCCGAATCCTTCCCATAATAGACACAGATGTCTCGCTGCTTTCCTTACCCACCTCCTGGTTACGTGAGGAAGGTGGCTAGCACCGAGGCGGCCTTGATCGAATCGATTAAGCTCCAATCTGAAAGACGACAGAGCAAGAATGATAGTAAGAAAGAGAAAAGTAAGCACAAGAAAGAGAAGAGCAAGGACAAGAAAGAGAGAAGTAAGGACAAGAAACACAAAAGCAAAGAACGTAAAGAAAAATCCTCCCATAGCCGTGACTTGAATGATCAGAAACAAAAGGAATGCTTAAAAGAAGCTAAGGAGCTTCTTAAGGGAACCAAAGTTGAAGCAGAACAATTAGAAAGGAGTGGTCTCACTGAAGAGCATGGACAACCTGTATGGCCTCAGAGCCCTGGATACTTGTCTGATGGAACTCAGATCAACCATAAGAGGAAAAGGGATGCTTCATTACAGTCTAATGAAGGCAAAATCATCCGAATCAAACTCTCACTAAGCCAGCAAGAGGATTCATCAGCTGGCAGTGAACAGACGTGTTCTACATCTGGTCGAGATATTTCTGTTGATCAAAAAAGAGATGAAAACAGTCGTGGATCTATTCAGCAAAATACTGGCTTCACCTATGCTGGAACAGCTGTTGCTGTCAACGATCCCTCTTCATCCAAACCAAAGATCCAATCTGTCAAGGACATTAGTTCGAAAGGTAATGTTGTGTCATTACCTCCTCGTACCAGAAGTCCTGCCGAATCTGCTTATGAGGCCTTGTTTGAGAAATGGGTAGCACCACCACTTCAATTGGAGCAACAAACGGATGATGAGGATTGGCTCTTTGGAAGAACTAGAAAGCAAGATGGACAAAGTACCAACAACAAAGCTTTCAGTTCTGTTCCTAGCTGTGGTAGAAGTTCGAGTTTGTGGCCGAGAGGACAATATCTTGCCGATGCTGATGTTTATTCATTACCTTATACGATCCCATTTTGATTTTGAATTCTTTACTTCACTGAGTAATATGTACAGTATGCCGGTAGGAACAATAGTCTTACTTTGGCGGTTATAATTGTTTTAGAATCAATATAGTTGACGCTCAATTTTGTGTCCTCTGTTGGGTACCGATGCAATCTGCTGTTACTTCCCCTTTCGATTAATGAACAAAACGTAAATTCTTGAGAGATATATGTAAATGTATTGCCAAGATATGTTTATGACAATATAGCACGGCTTTTTTTCACTTCAA 1369 41.27 MSRCFPYPPPGYVRKVASTEAALIESIKLQSERRQSKNDSKKEKSKHKKEKSKDKKERSKDKKHKSKERKEKSSHSRDLNDQKQKECLKEAKELLKGTKVEAEQLERSGLTEEHGQPVWPQSPGYLSDGTQINHKRKRDASLQSNEGKIIRIKLSLSQQEDSSAGSEQTCSTSGRDISVDQKRDENSRGSIQQNTGFTYAGTAVAVNDPSSSKPKIQSVKDISSKGNVVSLPPRTRSPAESAYEALFEKWVAPPLQLEQQTDDEDWLFGRTRKQDGQSTNNKAFSSVPSCGRSSSLWPRGQYLADADVYSLPYTIPF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3169129 3171431 + XM_039029521.1 Bhi04g00123 31732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00123 317 MobiDBLite consensus disorder prediction 270 294 - -
Bhi04g00123 317 MobiDBLite consensus disorder prediction 30 45 - -
Bhi04g00123 317 MobiDBLite consensus disorder prediction 148 176 - -
Bhi04g00123 317 MobiDBLite consensus disorder prediction 28 193 - -
Bhi04g00123 317 MobiDBLite consensus disorder prediction 71 110 - -
Bhi04g00123 317 Coils Coil 42 69 - -
Bhi04g00123 317 PANTHER MYB-LIKE PROTEIN X 1 317 - -
Bhi04g00123 317 Coils Coil 88 108 - -
Bhi04g00123 317 MobiDBLite consensus disorder prediction 46 70 - -
Bhi04g00123 317 PANTHER DNA LIGASE 1 317 - -
Bhi04g00123 317 MobiDBLite consensus disorder prediction 272 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00123 - - - cmo:103488397 390.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00122 Bhi-Chr4:3169129 Bhi04g00123 Bhi-Chr4:3169129 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1150 . . . . . . . . . . . . . . Sed11g1102 . . Bhi04g00123 Tan02g2833 Cmetu03g0369 . . . Lcy13g1897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003832 2 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 3 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00123 Bhi_Chr04 FPKM 3.203039 4.652321 2.768585 2.214232 0.612049 0.909887 0.655681 0.634886 0.831577 0.607256