Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00140 TAATAGTACTAATAAGCTTCTCCTCCGCCGGAATTGCTCTGTTATTTAGAGCACCATTGTTCTGACTTGTAAAGTCAATTCTAATCTCTTTTTTCTCATCTTCCACTCCCAATTCCATTTATATATACACATCAAGAGAGAGAAAACTTCAAATCAAAAAGAGGAGAGAGAGAGTTCTTATTTTCAGAGATGAAATTTTGATTTTTGTTTGAGAAATTCAGAGAGCCCATTTAGCAAAGATATACAGTAATGCAGTGTATCTTCAATTCATGATCTCAAATTTTACCTAAATTATGTAACTTTTCTTGTTATTCAATCTTCAATGGGATTTCTTCAAACAGATTTTGTGTCTCCTTCTTTTTTGTTTCACTCTCTGCTTTTGATCTTCTTCTTTAAAGGCGTTTCTGGAGCTGGATTTACATTTGTTAATCGATGCGATTACACTGTTTGGCCGGGAATTCTTGGCAACACCCAATTGGAATCCACTGGATTCGAGCTTTCGCCAGGAGCGGCCCGTTCATTCCACGCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGTCGGACCGGCTGTTCCTTCGACCCAGCCACCGGTCAGGGCAGTTGTCAAACGGCTGATTGTGGGTCAAACCAAATGGAATGCAATGGCGCCGGAGCAACTCCGCCGGCGACTCTAGCTGAGTTTACGATCGGCAGTGGGGCCGGTGCGCAGGACTTTTACGATGTCAGCTTGGTCGACGGCTACAACATTCCGATGGTGGTGGATGCCACTGGTGGGAGCGGTGCGTGTCAGTCAACTGGGTGCGCGGCGGAGCTGAACCGGCGGTGCCCGACGGAGCTACGCGCTGGTGGAGGGAAGGCGTGTATGAGCGCGTGTGAAGCGTTTGGGAAGCCGNGATACTGTTTCGAAGGCGCGTATAACTCACCCGCCGCCTGTAAGCCGTCGATGTACTCGGAAATGTTCAAATCGGCTTGCCCTAAATCGTATAGCTATGCCTTTGATGACGCAACAAGCACTTTCACTTGTAGTGGTGCAGATTACACCATTACATTCTGCCCTTCATCATCAAGGTAA 1072 47.2 MGFLQTDFVSPSFLFHSLLLIFFFKGVSGAGFTFVNRCDYTVWPGILGNTQLESTGFELSPGAARSFHAPPGWSGRFWGRTGCSFDPATGQGSCQTADCGSNQMECNGAGATPPATLAEFTIGSGAGAQDFYDVSLVDGYNIPMVVDATGGSGACQSTGCAAELNRRCPTELRAGGGKACMSACEAFGKPXYCFEGAYNSPAACKPSMYSEMFKSACPKSYSYAFDDATSTFTCSGADYTITFCPSSSR 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3357662 3358813 - XM_039029604.1 Bhi04g00140 31749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00140 249 SUPERFAMILY Osmotin, thaumatin-like protein 32 246 IPR037176 -
Bhi04g00140 249 PANTHER OS03G0233200 PROTEIN 12 248 IPR001938 -
Bhi04g00140 249 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Bhi04g00140 249 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Bhi04g00140 249 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Bhi04g00140 249 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Bhi04g00140 249 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Bhi04g00140 249 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 12 248 - -
Bhi04g00140 249 ProSiteProfiles Thaumatin family profile. 29 245 IPR001938 -
Bhi04g00140 249 CDD TLP-PA 32 244 - -
Bhi04g00140 249 SMART tha2 32 245 IPR001938 -
Bhi04g00140 249 Pfam Thaumatin family 36 245 IPR001938 -
Bhi04g00140 249 Gene3D Thaumatin 30 245 IPR037176 -
Bhi04g00140 249 PIRSF PR5 2 249 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00140 - - - csv:101204331 470.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00140 Bhi09g02077 CCT
Bhi04g00140 Bhi09g02077 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00140 Bhi-Chr4:3357662 Bhi10g01868 Bhi-Chr10:46572117 2.26E-109 dispersed
Bhi04g00140 Bhi-Chr4:3357662 Bhi04g00141 Bhi-Chr4:3451987 3.21E-88 tandem
Bhi04g02382 Bhi-Chr4:65259990 Bhi04g00140 Bhi-Chr4:3357662 4.09E-67 transposed
Bhi09g00616 Bhi-Chr9:13160835 Bhi04g00140 Bhi-Chr4:3357662 9.22E-82 transposed
Bhi04g00140 Bhi-Chr4:3357662 Bhi09g02077 Bhi-Chr9:59344581 8.49E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1131 . Blo12g00882 . . . Bpe04g00250 . Bma01g02374 Cmo05g00315 . . Cma09g00098 . . . Cpe06g00061 . Bhi04g00140 Tan02g2082 . . Hepe10g0674 . Lcy13g1906 Cla08g01416 . Cec08g1472 Cco08g1605 Clacu08g1587 . Cre08g1370 . . Cone17ag1411 . Lsi04g01754 Csa03g04288 Chy04g00408 Cme03g01872 . . . . Bpe02g01730 Bpe05g00142 . Bma05g00168 Sed01g2481 . Cmo09g00095 Cma12g00403 Cma05g00313 Car05g00260 . Cpe11g00261 . Bhi09g02077 Tan01g5034 Cmetu04g3133 . Hepe01g1607 Mch11g0107 . Cla05g01863 Cam05g1992 Cec05g2004 Cco05g2062 Clacu05g1984 Cmu05g1865 Cre05g1989 Lsi08g01311 Csa02g02142 Chy03g01376 Cme04g00460
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00140 Bhi_Chr04 FPKM 40.555729 45.636372 2.974698 2.47873 5.045683 6.065018 5.773797 3.036231 3.287222 2.48216