Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00158 TCTCCTTTTTTGATTCGTTCGCCGCTTCTACGTACTCTTTCTCTTTCTTCTCTCTCTCTCCTCTTTTTTCCTTCTCTCTCTCTCTTTCCCTCCAATCTTCAAAATCCTCCATATCTCCCTCCCTTTTTCCTCCATCTTTTCCGATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTCCGATTTCATCTCCTTCGCTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGATTGCAACGGCCGTCTTGCTACCGACGCACATTCTGCAGTTGCTACACTAGACTTGAAACGAGCTTATGATATTAATGACTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCATTGGAAAACAAAACAAAAGATCGAAGTTACAGAAAAATTCGAAGTCTAGGACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGAATTGGTCTCATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCGAGAGCTCAACGATCAAGTTGGTACATTAAAGGCTGAAGTTAAAAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGGAAGAACCTTTTTATAACAGAAGAAGATATCTTGCGAATTCCTTGCTTTAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACCGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGGGCGGGAAGAAAATATTTCCAAGCAAGCAAAACTATCTTCAATACAGCAGAGGAATCCTAGCATACTTACCAACAGTACTTCTCCTTTCCAAGAATTTCAAGGAATGCAAAGAATTTTACCTGTACATAATAATGTAGACGATGATTACTGGTTCCAATCAAATTCACAAGTGAGTATTACTCATTTATGGGGTGAGGAACACAACTTTTAACTTGTCCCGGAAGACCAACAATCAAGAACCTCTGGTTTTCTTTATGGAGCACGACACAAATTTTTTCCATCAAAGAGGCCATGATGTTTCAACACTTTTCCATTTCTCTTACAGAAATTACCTCCGAAGGAATTCCTCAGAAAATAAAGAGAGTAATAATGAAGTATTATCAACTCTCAGCTCAAAGATATGAAGTGTTTATGTCTATTCTCCACAGTCCACAGCATTTTTGTTGAAGAGGTATGCCTGAGGCCTCCCTACTTACAGCTCCTCTTTTTATTTCCTTACTCTTTCCAAATGCTCAGGGCAATTAATTGTGCTATATATCTACATATCCATATTTATATGATATTGTAATTCATGATTTTGTTCTTTAGACTATAAAACAAAGGTGTTATACTAATAGAAGATGTTGTTTTTCTTTATAAATTTTATGATATTTTCTATTTCTAACTGAGAATTTTAGTTTTCCCTTACCAATAACATAGTAATAGTCAAGTTCCTCTGCCTAATAAAATTACATTAGTGTTTAATTCCTTGGTGTAAGTTTGAGTCTCCGCCCCGGTTACAATCAAATCCTAGTAACAGTCCTCATCTGGGCTTACAAATTTGTAGAAGGTCTCAATGACAATATGTACATGACCTCCTCCAATATGTGTAGTCCAATGTTTTAAAATGTTATTGAAGCTAACACCTTCAGACAAGGCTCTAACTTTTAACTCGAGATTTATGTATTTATTGACCATAAGAGACTTATGCCTTTCTGAAATTTCAATGACTCGTCTAGTAGTTTGAAAAATAATAATGATTTGCCTCATTCTAAAATATAAAAGATTTGGATGGTGACAATTTGAACTATTACTATTTTTACTATTGTGGCTTTGAGGACATTGAAGACAATACTTATAGTATCTATAAATAAGGCCTATTAGTGACCATAGTATGTGAAGTTAAAGATATCCTTTTAGAATTTTTTATTAAGTGAAAATTTATGGGGCAATATTTTATTATTATTATTATTATTATTATTATTATTTACATTTTTATATGACGGTCATGTTTAGCATTACTTGATCATACCAATTTAAGATGTGTAAAATATTTTTTTTATTTAATCTGAGACTTACGCTTTATACTGCGTGACCTCTTCAAGAAG 2532 37.28 MSNAVEDLILRHRHSDFRFHLLRSHSHHRDMSSSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNDCNGRLATDAHSAVATLDLKRAYDINDSEALASRQVVASEQRMRSNDSSCEPVSIGKQNKRSKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPRELNDQVGTLKAEVKSLYADERRLDELIRMKQELLRNLEENANHRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGREENISKQAKLSSIQQRNPSILTNSTSPFQEFQGMQRILPVHNNVDDDYWFQSNSQVSITHLWGEEHNF 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3863848 3869505 + XM_039030796.1 Bhi04g00158 31767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00158 410 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667|GO:0006355
Bhi04g00158 410 Coils Coil 247 270 - -
Bhi04g00158 410 Gene3D - 227 337 - -
Bhi04g00158 410 Gene3D - 150 222 IPR036388 -
Bhi04g00158 410 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667|GO:0006355
Bhi04g00158 410 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Bhi04g00158 410 MobiDBLite consensus disorder prediction 50 70 - -
Bhi04g00158 410 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Bhi04g00158 410 MobiDBLite consensus disorder prediction 101 126 - -
Bhi04g00158 410 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983
Bhi04g00158 410 PANTHER TRANSCRIPTION FACTOR E2FC 24 407 - -
Bhi04g00158 410 PANTHER TRANSCRIPTION FACTOR E2F 24 407 IPR015633 GO:0000978|GO:0006357
Bhi04g00158 410 MobiDBLite consensus disorder prediction 101 154 - -
Bhi04g00158 410 CDD E2F_DD 231 335 IPR032198 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00158 K06620 E2F3; transcription factor E2F3 - csv:101211469 665.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00158 Bhi-Chr4:3863848 Bhi10g00182 Bhi-Chr10:3975320 2.73E-80 dispersed
Bhi04g00158 Bhi-Chr4:3863848 Bhi08g01449 Bhi-Chr8:42588827 3.90E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
834 PF16421 E2F_CC-MB 1.40E-26 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00158 Bhi_Chr04 FPKM 5.781871 6.432411 8.821232 7.882862 8.922237 9.281618 8.764451 8.943266 8.741737 8.58149