Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g00162 CCATTTCCTCCACATCCAACACCCTCTCTTCAAACTCAAAAAAAAAAAAAAAAAAAAAAAATTATAAATCTATAATTCTCCAAAAATAATACAAAAATGGAAACAGAGCGGCGAGAGGGAAGCCAAGAGGCAGAGCATGCGGCGGCGGAGACGGCGGTGCAATCGAGGTTCCGTCGTATCTGCGTGTTCTGCGGCAGCAGCTCCGGCAAGAATCCGAGCTATCAAATTGCCGCCATTCAACTCGGAAAGCAACTGGTTGAAAGGAACATTGACCTTGTTTATGGCGGAGGAAGCATTGGGCTTATGGGCTTAGTTTCTCAAGCCGTGTACGATGGCGGACGCCACGTGTTAGGAGTAATTCCAAAATCTCTCATGCCAAGAGAGATCACTGGAGAGACAATTGGGGAAGTAAGAGCCGTATCTGGAATGCATCAACGCAAAGCTGAAATGGCTCGTCAAGCTGATGCATTTATTGCCTTGCCTGGTGGCTACGGAACATTGGAAGAACTATTGGAAGTCATAACTTGGGCTCAATTGGGCATCCACGAAAAACCGGTAGGGTTGCTGAACGTGGATGGGTACTACAACTCACTATTGTCATTCATAGACAAAGCAGTTGACGAAGGTTTCGTGTCACCAGCTGCCCGTAGCATTATAGTTTCTGCCCAAACTGCCCATGAGCTCATAACCAAGCTAGAGATTCTTCCACGTGTCTCTGAGCGTCCAACTCAATCATGTAACCAGAGCCGTCAATTTGCATGATCAGGAGTATGTCCCAAAGCATTCCGGCGTGGCATCAAAGCTGAGCTGGGAAATGGAACAACAACTCGGATATACAGCAAAGTCAGACATTGCTCGTTGACCTTAAAAGCAACCACGTGTATAGATTAATCACCGTTAGATTGAATTTGATCAGAGATTGGTTTGTAATTTTTGTAATGTTTTTTTCTTTTCCTCTCCGATTGTTTCATCCAATAGGAAGCTGACCAGGTCAACACTCAATTGTGTAAGCGATTATATAGTAGCTTTTTTCCACGTCGGTGATAATATTAATTAATAACTATATATATATATATATATTATTTATATAT 1091 43.08 METERREGSQEAEHAAAETAVQSRFRRICVFCGSSSGKNPSYQIAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKSLMPREITGETIGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHEKPVGLLNVDGYYNSLLSFIDKAVDEGFVSPAARSIIVSAQTAHELITKLEILPRVSERPTQSCNQSRQFA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3937081 3939674 - XM_039029595.1 Bhi04g00162 31771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g00162 221 Gene3D - 14 202 - -
Bhi04g00162 221 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 16 201 - -
Bhi04g00162 221 SUPERFAMILY MCP/YpsA-like 23 200 - -
Bhi04g00162 221 PANTHER LOG FAMILY PROTEIN YJL055W 16 201 - -
Bhi04g00162 221 Pfam Possible lysine decarboxylase 70 200 IPR031100 -
Bhi04g00162 221 TIGRFAM TIGR00730: TIGR00730 family protein 27 200 IPR005269 GO:0009691|GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g00162 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101211714 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00162 Bhi-Chr4:3937081 Bhi11g02400 Bhi-Chr11:65507005 9.95E-113 dispersed
Bhi09g01725 Bhi-Chr9:46901839 Bhi04g00162 Bhi-Chr4:3937081 5.67E-06 dispersed
Bhi04g00161 Bhi-Chr4:3937081 Bhi04g00162 Bhi-Chr4:3937081 4.73E-148 tandem
Bhi04g00162 Bhi-Chr4:3937081 Bhi04g00163 Bhi-Chr4:3937310 8.69E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033268 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g00162 Bhi_Chr04 FPKM 49.206413 53.251366 34.349648 33.463654 67.50219 69.962929 66.851578 49.377262 45.615452 46.343723